Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0317
         (807 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4VEF6 Cluster: Putative uncharacterized protein; n=1; ...    35   2.1  
UniRef50_A0D0A3 Cluster: Chromosome undetermined scaffold_33, wh...    34   4.8  
UniRef50_Q8CP92 Cluster: Membrane spanning protein; n=1; Staphyl...    33   8.5  

>UniRef50_A4VEF6 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 361

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 14/50 (28%), Positives = 30/50 (60%)
 Frame = +3

Query: 528 VILIIVLNIYFSKLLFIFYDVKSDYMLYFNEITSLRVLF*NVFIVCIVSV 677
           +  I+++  YFSK LF+  ++ SD M  +N I    +++  +F+V ++ +
Sbjct: 18  ITCIVIIYFYFSKELFVRKEILSDRMFVYNHIIQ-SIVWVRIFLVLVIKI 66


>UniRef50_A0D0A3 Cluster: Chromosome undetermined scaffold_33, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_33,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 330

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 465 RINEKCTVFKFRRKFAGS*STVILIIVLNIYFSKLL--FIFYDVKS-DYMLYFNEITSL 632
           ++N+K     F R   GS + VILI +      + L  FIFY +K   Y L+F  IT++
Sbjct: 260 KLNDKYEKITFHRTIVGSLTLVILIFISYFILEQTLADFIFYIIKEIIYALFFTIITTI 318


>UniRef50_Q8CP92 Cluster: Membrane spanning protein; n=1;
           Staphylococcus epidermidis ATCC 12228|Rep: Membrane
           spanning protein - Staphylococcus epidermidis (strain
           ATCC 12228)
          Length = 249

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
 Frame = +3

Query: 528 VILIIVLNIYFSKLLF---------IFYDVKSDYMLYFNEITSLRVLF*NVFIVCIVSVL 680
           V+L +++  Y S LLF         +FY  +S Y ++ +++TS+   +   FI   + +L
Sbjct: 65  VMLSLIIIGYLSSLLFYSEISTGRLLFYKDQSRYKIFNSKLTSIISSY---FIFLFILLL 121

Query: 681 CKCVVYYF*CMS*ERKLTELQLHNRKLNH 767
              VVY F   + E       L+N +LNH
Sbjct: 122 STLVVYLFYVNNHEYSSHSFMLNNSELNH 150


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,823,194
Number of Sequences: 1657284
Number of extensions: 11130709
Number of successful extensions: 23103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23090
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)