Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0317
         (807 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49993| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-13)                 30   1.9  
SB_44792| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-13)                 30   1.9  
SB_1954| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_5272| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.9  

>SB_49993| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-13)
          Length = 331

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 540 IVLNIYFSKLLFIFYDVKSDYMLYFNEITSLRVLF*NVFIVCIVSVLCKCVVYYF 704
           I+L   +   +F+F+ +  D  LYF      +V +  +F+VC+   +  C+ Y F
Sbjct: 249 ILLTTPYHAQIFVFFFLGGDLQLYF------KVYYGMLFLVCLNCAVSPCIYYVF 297


>SB_44792| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-13)
          Length = 331

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 540 IVLNIYFSKLLFIFYDVKSDYMLYFNEITSLRVLF*NVFIVCIVSVLCKCVVYYF 704
           I+L   +   +F+F+ +  D  LYF      +V +  +F+VC+   +  C+ Y F
Sbjct: 249 ILLTTPYHAQIFVFFFLGGDLQLYF------KVYYGMLFLVCLNCAVSPCIYYVF 297


>SB_1954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 540 IVLNIYFSKLLFIFYDVKSDYMLY 611
           I LNI F K+LFI +D+ S ++++
Sbjct: 125 ISLNIAFGKVLFILFDILSGFLIF 148


>SB_5272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 290 ISQQFLPILSAEIRTH*ELNAIVYLKLIFTFYCIVLLPTMRRSQSSSA 433
           IS  FL +L A+ R+H         K+   FYC +  PT+R+     A
Sbjct: 10  ISLVFLTMLLAQTRSHVIQETTFSSKVRKMFYCTIRQPTVRQDDGKPA 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,611,503
Number of Sequences: 59808
Number of extensions: 346834
Number of successful extensions: 564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)