Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0317
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.9  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   5.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
 Frame = -2

Query: 263  YTYATKQLSFCNLNATGNHSIRYIRSLDDNLPFIY--N*IFLEEI-----ARVGKYF*FL 105
            Y  A K+  F N+N    +   +    +  LPF+Y  N I L +      A++   F F+
Sbjct: 904  YIEAVKEGKFMNVNMLDTYESVHSFPTETGLPFVYTFNVIKLTKTSGTVQAQINPDFAFI 963

Query: 104  ITYSLQIKFA 75
            +  +L++ F+
Sbjct: 964  VNSNLRLTFS 973


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 435 ILKAILFRKCRINEKCTVFKFRR 503
           I + I +R C  N++C++ +  R
Sbjct: 46  IQQKIQYRPCTKNQQCSILRINR 68


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 435 ILKAILFRKCRINEKCTVFKFRR 503
           I + I +R C  N++C++ +  R
Sbjct: 95  IQQKIQYRPCTKNQQCSILRINR 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,279
Number of Sequences: 438
Number of extensions: 3739
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)