Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0317
         (807 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50360.1 68414.m05645 myosin family protein contains Pfam pro...    30   1.6  
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin...    30   2.1  
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR...    28   6.3  
At1g19520.1 68414.m02431 expressed protein                             28   8.4  

>At1g50360.1 68414.m05645 myosin family protein contains Pfam
           profiles: PF00063 myosin head (motor domain), PF00612 IQ
           calmodulin-binding motif
          Length = 1153

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 210 VTSSIKVAKRKLFRSIGVLNIYILSCQYHSSFCQYC 317
           +  S+ V KR+  RSI +L+IY       +SF Q+C
Sbjct: 501 INKSLAVGKRRTGRSISILDIYGFESFNKNSFEQFC 536


>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
           [Arabidopsis thaliana] GI:6491702; similar to myosin
           GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
           profiles: PF00063: myosin head (motor domain), PF00612:
           IQ calmodulin-binding motif; identical to cDNA myosin
           (ATM) GI:297068
          Length = 1166

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 210 VTSSIKVAKRKLFRSIGVLNIYILSCQYHSSFCQYC 317
           +  S+ V KR+  RSI +L+IY       +SF Q+C
Sbjct: 509 INKSLAVGKRRTGRSISILDIYGFESFDKNSFEQFC 544


>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1188

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 504  KFAGS*STVILIIVLNIYFSKLLFIFYDVKSDYML 608
            K  G+   + L++VL +YF  L  IF +  +DY++
Sbjct: 1151 KILGAIGFLTLVVVLEVYFELLSSIFANSTTDYIM 1185


>At1g19520.1 68414.m02431 expressed protein
          Length = 372

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 239 SFCNLNATGNHSIRYIRSLDDNLPFIYN*IFLEEIARVGKYF*FLITYSL-QIKFAIQNK 63
           +F  + +T +HS R++RS D+  PF  N      I+   +YF F     L +   AI + 
Sbjct: 27  NFSAITSTISHSDRHLRSYDEQTPF-QNVEIPRPISSFNRYFHFTRESRLSESSAAIDDS 85

Query: 62  HDE 54
           +D+
Sbjct: 86  NDQ 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,804,806
Number of Sequences: 28952
Number of extensions: 245438
Number of successful extensions: 448
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)