Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0315
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 33 0.24
04_04_1647 + 35032328-35033803 31 0.74
05_04_0337 - 20372378-20373094,20373320-20373379,20373992-203742... 30 1.7
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611... 29 4.0
03_01_0564 - 4176177-4178096 29 4.0
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 28 5.2
04_04_1393 - 33204699-33204806,33204927-33205164,33205581-332058... 28 5.2
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086... 28 6.9
01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498... 28 6.9
02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790 27 9.2
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 27 9.2
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 245 SGCRQPS--CQWRPSPDPGQVRSCPRCPSLHTG 337
SGCR+ WR SP ++ CP C HTG
Sbjct: 403 SGCREAGGPWTWRESPASRAMQKCPACKRTHTG 435
>04_04_1647 + 35032328-35033803
Length = 491
Score = 31.1 bits (67), Expect = 0.74
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 248 GCRQPSCQWRPSPDP-GQVRSCPRCP 322
GCR PSC W SPD R+ CP
Sbjct: 150 GCRNPSCLWIHSPDHLSDCRAASSCP 175
>05_04_0337 -
20372378-20373094,20373320-20373379,20373992-20374266,
20374358-20374619
Length = 437
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 260 PSCQWRPSPDPGQVRSCPRCPSLHTGIRSECRSPCSRP 373
P+C+ RPSP + + S H ++ EC + + P
Sbjct: 252 PACRHRPSPSSSSTTTAQQHTSFHQLLQGECSAAAAAP 289
>05_05_0036 -
21758409-21758531,21758891-21759206,21759964-21761121,
21761236-21761333
Length = 564
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 161 VRWPWICHDGWPRLFDASI*SSASLLPHVRSE 66
VR+ W+C+D RL D S+ S S ++ E
Sbjct: 416 VRFEWVCYDSAKRLLDKSLYSVLSDFAQIQDE 447
>03_01_0564 - 4176177-4178096
Length = 639
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/51 (21%), Positives = 27/51 (52%)
Frame = +1
Query: 187 RRSIYPWVLWSYLSTMTWYQRLSATILSMETLAGSWPGSELSPMSITTYGY 339
RR ++PWVL ++ ++ W+ ++ ++++ G G S + +T +
Sbjct: 467 RRFLFPWVLGGFVMSIIWFYIIANELVALLVAFGVILGINPSILGLTVLAW 517
>07_03_0635 +
20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 184 ARRSIYPWVLWSYLSTMTWYQRLSATILSMETLAGSW--PGSELSPMSITTYGYPF 345
+R+ I PW +W Y ++ Y + ++ E LA W P ++ S +S T G F
Sbjct: 706 SRKDIKPWWIWGYWTSPMMYSNNALSV--NEFLASRWAIPNND-SSISAPTIGKAF 758
>04_04_1393 -
33204699-33204806,33204927-33205164,33205581-33205825,
33206229-33206339,33206645-33206743,33207684-33207731,
33207882-33207999,33208085-33208115,33208700-33208806,
33209644-33209725,33210010-33210104,33210579-33210664,
33211074-33211195,33211613-33211824,33212362-33212510,
33212755-33212982
Length = 692
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 617 VCLKIIYSYTINNITMICTILQHTINL 537
V +KII SY NN+ + + QH I+L
Sbjct: 596 VFVKIIESYKSNNVNQVSNLCQHFIDL 622
>04_04_0326 -
24407201-24407374,24407397-24407460,24408266-24408689,
24408885-24409057,24409178-24409275,24409723-24409853,
24410053-24410174,24411091-24411245,24411976-24412081,
24412328-24412419,24412499-24412620,24413444-24413544,
24413636-24413849,24414173-24414311,24415228-24415584
Length = 823
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 188 LAVWPSRVQVRWPWICHDGWPRLFDASI*SSASLLPHVRSERLDI 54
LAV PS PW CH R+ +A +S P R E +
Sbjct: 731 LAVTPSMFTDHLPWRCHYAMQRVLEAQTAASCPDSPESRIELFSV 775
>01_06_1252 -
35748000-35748173,35748243-35748375,35749771-35749847,
35750465-35750509,35750584-35750679,35751125-35751130,
35751259-35751388,35751510-35751706
Length = 285
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 235 SSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN-QVLLFFRTYA 71
SS G+ + +D I SG G A G GY+ PQSN +L+ +++A
Sbjct: 117 SSKAGDGSVKKDT-IGPHSGASSSSAQGMVGAYTQGMGYMQPQSNFHILVVLQSFA 171
>02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790
Length = 192
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 137 DGWPRL-FDASI*SSASLLPHVRSERLDIP 51
DG R+ FDAS S +L+P +RS R ++P
Sbjct: 131 DGLRRINFDASTNSMVALVPRLRSSRPELP 160
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 212 CGVTCQR*LGTSGCRQPSCQWRPSPDPGQVRSCPRCPSL 328
C + CQR R+P C P P P + CP C +L
Sbjct: 577 CNLPCQR------VREPPCS-HPCPLPCHLNDCPPCKAL 608
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,844,512
Number of Sequences: 37544
Number of extensions: 425269
Number of successful extensions: 1305
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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