Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0315
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 38 0.007
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 37 0.012
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 37 0.012
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1) 36 0.035
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 33 0.25
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) 31 1.0
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) 30 1.3
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 30 1.3
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 30 1.8
SB_28303| Best HMM Match : DUF1168 (HMM E-Value=1.9) 29 2.3
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10) 29 3.1
SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033) 29 3.1
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 29 4.1
SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8) 28 5.4
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69) 28 5.4
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4) 28 7.1
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031) 28 7.1
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) 27 9.4
SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 27 9.4
SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016) 27 9.4
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) 27 9.4
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 27 9.4
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2) 27 9.4
SB_16342| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Frame = +2
Query: 413 CCEC-VTCVS--VCFYDVRVLRSECEFVCYIVPVIFSACTHEC----VISLLYAVIWYKS 571
CC C V C S V Y RV C VCY V+F +C C V+ V+ Y
Sbjct: 171 CCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVVFCSCRVACCSCRVVCYSCRVVCYSC 230
Query: 572 LLCC**CK 595
+ C C+
Sbjct: 231 RVACCSCR 238
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Frame = +2
Query: 350 CRSPCSRPKKR*CEILEIVLKCCE--CVTCVSVCFYDVRVLRSECEFVCYIVPVIFSACT 523
CR C + C +V C C +C VC Y RV C VCY V +C
Sbjct: 209 CRVACCSCRVV-CYSCRVVCYSCRVACCSCRVVC-YSCRVACCSCRVVCYSCRVACCSCR 266
Query: 524 HECVISLLYAVIWYKSLLCC 583
S V + CC
Sbjct: 267 VHMKCSSCRVVCSSCRVACC 286
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/68 (26%), Positives = 26/68 (38%)
Frame = +2
Query: 392 ILEIVLKCCECVTCVSVCFYDVRVLRSECEFVCYIVPVIFSACTHECVISLLYAVIWYKS 571
I VL+ V + C R+ C VCY V+F +C C V+ Y
Sbjct: 106 IAHAVLRDAHVVLLMPCC--SCRIACCSCRVVCYSCRVVFCSCRVACCSC---RVVCYSC 160
Query: 572 LLCC**CK 595
+ C C+
Sbjct: 161 RVACCSCR 168
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 37.1 bits (82), Expect = 0.012
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = -3
Query: 615 MS*NHIFLHY*QHNNDLYHITAYNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTL 436
+S H +H H++ L T + THS HAL+ T TI HT+SHS + S TL
Sbjct: 339 LSFTHTLIHTHSHSHAL-SFTPRTVIHTHSHPHALSFTRTIIHTHSHS--HHALSFTCTL 395
Query: 435 THV-THSQHFNTISNISH 385
H +HS + S + H
Sbjct: 396 IHTHSHSLALSFTSTLIH 413
Score = 35.5 bits (78), Expect = 0.035
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = -3
Query: 579 HNNDLYHITAYNKLI--THS*VHALNITGTI*HTNSH--SLRNTRTS*KHTLTHVTHS 418
H + H ++ + + THS HAL T T+ HT+SH SL TRT TL H THS
Sbjct: 246 HTHSPSHTLSFTRTLIHTHSHSHALLFTRTLIHTHSHPHSLLFTRTIIHTTLIH-THS 302
Score = 31.1 bits (67), Expect = 0.76
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = -3
Query: 561 HITAYNKLI--THS*VHALNITGTI*HTNSHS--LRNTRTS*KHTLTHVTHSQHF 409
H ++ + I THS H L+ T T+ HT+SHS L TRT HT +H HS F
Sbjct: 236 HALSFTRTIIHTHSPSHTLSFTRTLIHTHSHSHALLFTRTL-IHTHSH-PHSLLF 288
Score = 31.1 bits (67), Expect = 0.76
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -3
Query: 594 LHY*QHNNDLYHITAYNKLITHS*VHALNITGTI*HTNSHS--LRNTRTS*KHTLTH 430
+H H + L + + + THS HAL+ T T+ HT+SHS L T + HT +H
Sbjct: 314 IHTHSHPHSL--LFTFTIIRTHSHSHALSFTHTLIHTHSHSHALSFTPRTVIHTHSH 368
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 615 MS*NHIFLHY*QHNNDLYHITAYNKLITHS*VHALNITGTI*HTNSHS--LRNTRT 454
+S +H H++ T + THS AL+ T T+ HT+SHS L TRT
Sbjct: 372 LSFTRTIIHTHSHSHHALSFTC-TLIHTHSHSLALSFTSTLIHTHSHSHALSFTRT 426
>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 37.1 bits (82), Expect = 0.012
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = -3
Query: 591 HY*QHNNDLYHITAYNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THS 418
HY N L H + + T S H +IT TI T+ +++ NT +T + TH
Sbjct: 151 HYNITNTSLQH---HEHITTTSRTHHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHH 206
Query: 417 QHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRT 298
+H TIS HY +H E I S H + T
Sbjct: 207 EHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHITT 244
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 591 HY*QHNNDLYHITAYNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THS 418
HY N L H + + T S H +IT TI T+ +++ NT +T + TH
Sbjct: 184 HYNITNTSLQH---HEHITTISRTHHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHH 239
Query: 417 QHFNTISNISHY 382
+H TIS HY
Sbjct: 240 EHITTISRTHHY 251
Score = 31.9 bits (69), Expect = 0.43
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Frame = -3
Query: 489 HTN----SHSLRNTRTS*KH----TLTHVTHSQHFNTISNISHYRFLGRLHGDRHSERIP 334
HTN +H T TS +H T T TH +H TIS HY +H E I
Sbjct: 142 HTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHITTISRTHHYNITNT--SLQHHEHIT 199
Query: 333 VCSDGHRGQLRT 298
S H + T
Sbjct: 200 TISRTHHEHITT 211
>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
Length = 225
Score = 37.1 bits (82), Expect = 0.012
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = -3
Query: 591 HY*QHNNDLYHITAYNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THS 418
HY N L H + + T S H +IT TI T+ +++ NT +T + TH
Sbjct: 84 HYNITNTSLQH---HEHITTTSRTHHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHH 139
Query: 417 QHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRT 298
+H TIS HY +H E I S H + T
Sbjct: 140 EHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHITT 177
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 591 HY*QHNNDLYHITAYNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THS 418
HY N L H + + T S H +IT TI T+ +++ NT +T + TH
Sbjct: 117 HYNITNTSLQH---HEHITTISRTHHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHH 172
Query: 417 QHFNTISNISHY 382
+H TIS HY
Sbjct: 173 EHITTISRTHHY 184
Score = 31.9 bits (69), Expect = 0.43
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Frame = -3
Query: 489 HTN----SHSLRNTRTS*KH----TLTHVTHSQHFNTISNISHYRFLGRLHGDRHSERIP 334
HTN +H T TS +H T T TH +H TIS HY +H E I
Sbjct: 75 HTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHITTISRTHHYNITNT--SLQHHEHIT 132
Query: 333 VCSDGHRGQLRT 298
S H + T
Sbjct: 133 TISRTHHEHITT 144
>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
Length = 236
Score = 35.5 bits (78), Expect = 0.035
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = -3
Query: 561 HITAYNKLITHS*VHALNITGTI*HTNSHSLRNTR---TS*KHTLTHVTHSQHFNTISNI 391
H+T Y ++H+ H L++TG H H+L TR + +HTL HVT T +
Sbjct: 118 HVTRY---MSHATCHTLHVTGNTSHATCHTLHVTRYMSHATRHTL-HVTRYTSHATCHTL 173
Query: 390 SHYRFLGRL--HGDRHS 346
H + R H RH+
Sbjct: 174 RHTLHVTRYTSHSTRHT 190
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -3
Query: 561 HITAYNKLITHS*VHALNITGTI*HTNSHSLRNTR---TS*KHTLTHVTHSQHFNTISNI 391
H+T Y ++H+ H L++TG H H+L TR + HTL HVT + T +
Sbjct: 90 HVTRY---MSHATCHTLHVTGNTSHATCHTLHVTRYMSHATCHTL-HVTGNTSHATCHTL 145
Query: 390 SHYRFLGRLHGDRHS 346
R++ H RH+
Sbjct: 146 HVTRYMS--HATRHT 158
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 561 HITAYNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTH 421
H+T Y T H L++TG H H+L TR H H H
Sbjct: 34 HVTRYMSQAT---CHTLHVTGNTSHATCHTLHVTRYM-SHATRHTLH 76
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 561 HITAYNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQH 412
H+T Y ++H+ H L++T H H+LR+T ++T H+ H
Sbjct: 146 HVTRY---MSHATRHTLHVTRYTSHATCHTLRHTLHVTRYTSHSTRHTLH 192
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 561 HITAYNKLIT-HS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNT 403
H+T Y T H+ H L++T H+ H+L TR H H+ H + +
Sbjct: 160 HVTRYTSHATCHTLRHTLHVTRYTSHSTRHTLHVTRYM-SHASRHMLHVTRYTS 212
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 561 HITAYNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTH 421
H+T Y +HS H L++T + H + H L TR + H H H
Sbjct: 178 HVTRYT---SHSTRHTLHVTRYMSHASRHMLHVTRYT-SHATRHTLH 220
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 199 KLISSQSGPQEYRFDGRGYAT-MAGRGYLTPQSNQVLLFFRTYAPNGLI 56
+++ ++ P+ Y FDG YA + + N V+L FRT PNGL+
Sbjct: 749 RILKRETDPEGY-FDGSAYAEYLLNDEKVDSNKNTVMLEFRTIQPNGLL 796
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 160 FDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLLKAS 38
F G GY G +N++ L+FRT P+GLI L S
Sbjct: 1339 FPGNGYYKFPGSYVREGTTNEIELWFRTQYPDGLILFLSDS 1379
>SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 31.9 bits (69), Expect = 0.43
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = -3
Query: 561 HITAYNKLITHS*VHALNITGTI*HTNSHSLRNTR--TS*KHTLT----HVT-HSQH 412
H+T Y + +TH H TG + H++R T T KH +T HVT H +H
Sbjct: 24 HVTRYTRHVTHYTRHVTRYTGHVTRYTRHAIRYTNHVTCYKHYITCYTRHVTNHKRH 80
>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
Length = 422
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 293 GQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCEC 424
GQ +SC RC + G++ EC P RP +R E L + +C
Sbjct: 198 GQPQSCLRCSEIGHGVK-ECTKPRRRPHRRRREELTTEQERMQC 240
>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 675
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +2
Query: 212 CGVTCQR*--LGTSGCRQPSCQWRPSPDPGQVRSC--PRCPSLHTGIRSECRSPC 364
C VTC L T C + P P + R C P CP G SEC C
Sbjct: 222 CSVTCGEGIQLHTVVCSTGNQSQCKKPKPSEARKCQLPACPEWTVGKWSECSRTC 276
>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
Length = 540
Score = 30.3 bits (65), Expect = 1.3
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +2
Query: 305 SCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCECV---TCVSVCFYDVRVLRSE 475
SC RC LH G+ S C P + ++ I C CV +S+CF RVL
Sbjct: 337 SC-RCV-LHRGLMSMCF-----PSRANVDVFHIACSCL-CVLHRVLMSMCFD--RVLMPM 386
Query: 476 CEFVCYIVPVIFSACTHECV 535
C +C V V AC+ CV
Sbjct: 387 CSPLCVHVDVFPIACSCRCV 406
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 52 GISSRSERTCGRREALD*IEASNNLGQPSWHIHGHRTCTLEGQTARR 192
G + E CG+R D +NN+ Q S IHG+ TL+G R
Sbjct: 684 GTNKLYECKCGQRHCGDKSNLTNNVCQFSHCIHGNCMVTLDGHRCAR 730
>SB_28303| Best HMM Match : DUF1168 (HMM E-Value=1.9)
Length = 304
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 207 GSVELPVNDDLVPAVVGNHLVNGDPRRILARFGAVPDVHHYIRVSVLNADHHVVVLKN 380
G V+ P+N D + + N +V+G P + ++R+ VH Y V ++++ L+N
Sbjct: 61 GPVQNPINHDTLRGEIRN-VVSGSPSKKISRWRREYRVHFYNEVGKIDSEKLKETLQN 117
>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
Length = 293
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 489 HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYR 379
HT ++S +TR + H TH TH +T +N SH R
Sbjct: 170 HTRNNS-SHTRNNSSHGTTHRTHGTTHHTQNNSSHTR 205
>SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033)
Length = 551
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 455 VRVLRSECEFVCYIVPVIFSACTHECVISLLYAVIWYKSLL 577
V VL + +VP S C + C++S+L ++WY+ LL
Sbjct: 374 VSVLTGIVWYQYLLVPYGISTCWY-CMVSVLTGIVWYEFLL 413
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = -3
Query: 567 LYHITAYNKLITHS*VHALNIT------GTI*H-TNSHSLRNTRTS*KHTLTHVTHSQHF 409
L H+T ITHS + L +T T+ H T +HS T TLTH T +
Sbjct: 62 LTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTITHST 121
Query: 408 NTISNISH 385
T SN++H
Sbjct: 122 LTHSNLTH 129
>SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)
Length = 604
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -3
Query: 522 VHALNI-TGTI*HTNSHSLRNTRTS*K-HTLTHVTHSQHFNTISNISH 385
VH+ NI +GT N ++L + S +TL+ + HS + NT+S I H
Sbjct: 308 VHSSNILSGTDHSDNGNNLSSMDHSDNDYTLSGIDHSDNGNTLSGIDH 355
>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Frame = +3
Query: 402 LC*SVVSALHV*V-----CVFMMCACYEVSVSLCVI*CRLYLVRVLMSAL*VYCML*Y-- 560
LC V S HV V C M C++ LC ++ V V+MS + V C+ Y
Sbjct: 556 LCRYVASVQHVYVVMSPVCTMFMSLCHQCVPCLCRYVASVHHVYVVMSPV-VPCLCPYVA 614
Query: 561 GTNHCYVVNSV 593
+H YV+ S+
Sbjct: 615 SVHHVYVIMSL 625
>SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 23 RCFEDRRLEKVYQAVRSVRAEEEKHLIRL--RRQITSA-SHRGISTAIE 160
+ EDRR+ K + R +A E++H+ + R +T A R IS A+E
Sbjct: 76 KALEDRRITKELEGRRVTKALEDRHVTKALEDRHVTKALEDRRISKALE 124
>SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69)
Length = 250
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 497 LYNTQTHTHFVTRAHHKNTH 438
+YN + HT + AHH NTH
Sbjct: 19 IYNNKCHTEKASIAHHLNTH 38
>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 465 NTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDR 352
+T S TL VTHS ++++ ++SH RF G H R
Sbjct: 240 HTLVSVSLTLLGVTHSIRYHSLFSVSHTRF-GVTHSSR 276
>SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 577
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Frame = +2
Query: 260 PSCQWRPSPDPGQ---VRSCPRCPSL 328
P C+W P+PD G C CP L
Sbjct: 161 PDCRWCPAPDCGYAVIATGCASCPKL 186
>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1227
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -3
Query: 468 RNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDRHSE 343
R T ++T+ TH +H NTI +H+ + H E
Sbjct: 413 RTTHLEHENTIPRTTHHEHENTIPRTTHHEHENTIPRTTHHE 454
>SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4)
Length = 196
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Frame = -2
Query: 292 RIRRGSPLTRW-----LPTTAGTKS-SLTGNSTEPRDKLISSQSG--PQEYRFDG----R 149
++ GSP+TRW LP T + TG+ E + SQ G PQ YR G +
Sbjct: 95 KVTTGSPVTRWKVTTGLPVTRWKVTYRATGHKVESYLQGYRSQGGRLPQGYRSQGGRLPQ 154
Query: 148 GYATMAGR 125
GY + G+
Sbjct: 155 GYRSQGGK 162
>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
Length = 563
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +2
Query: 386 CEILEIVLKCCECVTCVSVC---FYDVRV--LRSECEFVCYIVPVIFSACTHECVISLLY 550
C +L V+ C + CV +C Y V++ + C +C +VP C CV+ LY
Sbjct: 422 CVVLCRVVLCRVVLYCVVLCRVVLYCVKLCCVVLHCVVLCCVVPCCVVLC---CVV--LY 476
Query: 551 AVIWYKSLLC 580
V+ + +LC
Sbjct: 477 CVVLCRVVLC 486
>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
Length = 889
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -2
Query: 310 TAPNLARIRRGSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMA 131
T P+L + + + +G SSL GN++ P L +S + PQ G + + A
Sbjct: 528 TDPSLGTASQSASIFGTAVNPSGQLSSLFGNTSHPSTTLTASTNNPQPSTQSGALFGSAA 587
>SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
Length = 295
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 180 DCEEINLSLGSV-ELPVNDDLVPAVVGNHLVNGDPRRILARFGAVPDVHHYIR 335
D E LS+ + +LP++ + + V H+++ + L +G + DV H R
Sbjct: 29 DAESFTLSIKTRGDLPISLTCIASKVLEHIIHSHVMKHLQHYGILTDVQHGFR 81
>SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016)
Length = 832
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 205 WVLWSYLSTMTWYQ 246
WV+ SYL+ TWYQ
Sbjct: 65 WVITSYLTNCTWYQ 78
>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
Length = 3561
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -2
Query: 241 TKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAP 68
TK TGN EP + Q G G+A G+GY T ++ Q + YAP
Sbjct: 3494 TKEGRTGNEYEPSEG--PGQGTGHVSGASGAGHAGTGGQGYGTSRTGQ--FYGSVYAP 3547
>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 482 THTHFVTR--AHHKNTHSHM*RTHNTSTQFLIFHTTVF*DDYM 360
THTH TR H +TH+H H+T + H T D ++
Sbjct: 483 THTHETTRHDTHLYDTHTHETTRHDTHLHDMHTHETTRHDTHL 525
>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
Length = 429
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +2
Query: 212 CGVTCQR*LG--TSGCRQPSCQWRPSPDPGQVRSCPR--CPSLHTGIRSECRSPC 364
C VTC + T C + S P V C + CP G SEC S C
Sbjct: 15 CSVTCGAGVKRRTVTCTSDNITCNESQKPPHVARCEKGECPRWTAGAWSECSSTC 69
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Frame = +2
Query: 413 CCECV-----TCVSVCFYDVRVLRSECEFVCYIVPVIFSACTH 526
C CV C+ VCF V + C VC V SAC H
Sbjct: 1046 CFSCVHLSVRVCLPVCFSCVHLSVRVCSPVCSRVFTCLSACVH 1088
>SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2)
Length = 919
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -2
Query: 241 TKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAP 68
TK TGN EP + Q G G+A G+GY T ++ Q + YAP
Sbjct: 38 TKEGRTGNEYEPSEG--PGQGTGHVSGASGAGHAGTGGQGYGTSRTGQ--FYGSVYAP 91
>SB_16342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 316 SGTAPNLARIRRGSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEY 164
SG+AP RR L + T G+K S G+ST+ ++S E+
Sbjct: 211 SGSAPGSDLFRRRDFLEVDMDTDGGSKGSSVGSSTKGSKASLNSSDNSSEH 261
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,182,481
Number of Sequences: 59808
Number of extensions: 514935
Number of successful extensions: 1640
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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