Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0314
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    28   1.3  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    28   1.8  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    26   5.4  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    26   5.4  

>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -3

Query: 179 KKCN*LPDP---WIFKSFNS*GLFKLIQLWDTFDSKLGVVRHCVRGP 48
           K  N LP P   W   S    GL++++  +DT +++ G      +GP
Sbjct: 73  KAMNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKEAQAGCTFGYTKGP 119


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 331 IASIFLSYGLFIWAVLAQRNKQLSH 405
           I S  +SYG   W+V+A RN  L H
Sbjct: 190 ILSYSISYGTLAWSVVAWRNSLLFH 214


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 633 TITQNNYTLLCNNINIYLFKLNESFPTITLLNRIYICF 520
           T  +NN +   +N + +L KL  SF  I +LN + IC+
Sbjct: 57  THRENNPSRSTDNSSPFLIKLLISFTPIYVLNVLAICY 94


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 633 TITQNNYTLLCNNINIYLFKLNESFPTITLLNRIYICF 520
           T  +NN +   +N + +L KL  SF  I +LN + IC+
Sbjct: 57  THRENNPSRSTDNSSPFLIKLLISFTPIYVLNVLAICY 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,616
Number of Sequences: 5004
Number of extensions: 63127
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)