Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0314
         (793 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456924-1|CAG33205.1|   98|Homo sapiens NDUFB3 protein.               43   0.001
BC018183-1|AAH18183.1|   98|Homo sapiens NADH dehydrogenase (ubi...    43   0.001
AF047183-1|AAC04268.1|   98|Homo sapiens NADH-ubiquinone oxidore...    43   0.001
AF035839-1|AAC15590.1|   98|Homo sapiens NADH:ubiquinone oxidore...    43   0.001
AC007272-1|AAX88972.1|   98|Homo sapiens unknown protein.              43   0.001

>CR456924-1|CAG33205.1|   98|Homo sapiens NDUFB3 protein.
          Length = 98

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 36  GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 161
           GH HG     +P Y Q+ ++G P L+ ++K LA KGL+DPW R
Sbjct: 6   GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGR 47


>BC018183-1|AAH18183.1|   98|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 beta subcomplex, 3, 12kDa protein.
          Length = 98

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 36  GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 161
           GH HG     +P Y Q+ ++G P L+ ++K LA KGL+DPW R
Sbjct: 6   GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGR 47


>AF047183-1|AAC04268.1|   98|Homo sapiens NADH-ubiquinone
           oxidoreductase subunit CI-B12 protein.
          Length = 98

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 36  GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 161
           GH HG     +P Y Q+ ++G P L+ ++K LA KGL+DPW R
Sbjct: 6   GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGR 47


>AF035839-1|AAC15590.1|   98|Homo sapiens NADH:ubiquinone
           oxidoreductase B12 subunit protein.
          Length = 98

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 36  GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 161
           GH HG     +P Y Q+ ++G P L+ ++K LA KGL+DPW R
Sbjct: 6   GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGR 47


>AC007272-1|AAX88972.1|   98|Homo sapiens unknown protein.
          Length = 98

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 36  GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIR 161
           GH HG     +P Y Q+ ++G P L+ ++K LA KGL+DPW R
Sbjct: 6   GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGR 47


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,108,467
Number of Sequences: 237096
Number of extensions: 2158745
Number of successful extensions: 7161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7161
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)