Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0313
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238     33   0.24 
01_04_0055 + 15462137-15462324,15467316-15467421,15468589-154688...    31   0.97 
01_01_0264 - 2139865-2140036,2140443-2140499,2140940-2141091           30   1.7  
01_04_0058 + 15490220-15490545,15491786-15491849,15491950-154920...    29   2.9  
12_01_0113 - 864380-865027,865419-866408,867128-867194,868377-86...    29   3.9  

>09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238
          Length = 472

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 357 TNKTIYLQGFATSTNKNTKPIQ*YHYH*ILSLNCTLQ*IFLKINLKTIDVTRTI 196
           +NK     G  T+T   T     +H+H +L  +C L  +    N  ++DV+R +
Sbjct: 312 SNKMFSSDGLTTATTTTTTAHHHHHHHQVLDSDCALSLLSSPANSSSVDVSRMV 365


>01_04_0055 +
           15462137-15462324,15467316-15467421,15468589-15468807,
           15469826-15470172,15471365-15471428,15471519-15471624,
           15471709-15471849,15473619-15473767,15473942-15474107,
           15474216-15474259
          Length = 509

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = +2

Query: 35  IKELSLIYHDRPVSPGAELVHWVEHVVKTKGALHLRSPALHVPFYQKLYLDLLA--IVLV 208
           +KEL  IY+ R + P  +++  + + VK   +  L +  L    Y  +YL LLA  +   
Sbjct: 215 VKELLDIYNIRRIGPDTKVLGLIANPVKQSKSPILHNKCLQSIGYNAVYLPLLADDLARF 274

Query: 209 TSIVLRFIFKNIHCNVQFK-DKIQ 277
            S      F    C++ FK D +Q
Sbjct: 275 LSTYSSPDFSGFSCSLPFKVDAVQ 298


>01_01_0264 - 2139865-2140036,2140443-2140499,2140940-2141091
          Length = 126

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 358 NK*NNISARFCDIYQQKYKTYTIISLSLNFIFKLYVTVNILKDKSQND 215
           NK   I +  CD+YQ + + YT IS   ++ F+  +++   + K  N+
Sbjct: 19  NKSTLIPSNMCDLYQSRGEKYTEISEISSYRFRSTISIPFSRKKYANE 66


>01_04_0058 +
           15490220-15490545,15491786-15491849,15491950-15492055,
           15492144-15492284,15492601-15492749,15493106-15493271,
           15493638-15493651
          Length = 321

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +2

Query: 35  IKELSLIYHDRPVSPGAELVHWVEHVVKTKGALHLRSPALHVPFYQKLYLDLLA--IVLV 208
           ++EL  IY  R + P  +++  + + VK   +  L +  L    Y  +YL LLA  I   
Sbjct: 37  VEELIDIYDIRRIGPDTKVLGVIANPVKQSKSPVLHNTCLQSVGYNAVYLPLLADNIARF 96

Query: 209 TSIVLRFIFKNIHCNVQFK-DKIQ 277
            S      F    C++ FK D +Q
Sbjct: 97  LSTYSSPDFSGFSCSLPFKVDAVQ 120


>12_01_0113 -
           864380-865027,865419-866408,867128-867194,868377-868468
          Length = 598

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +2

Query: 65  RPVSPGAELVHWVEHVVKTKGALHLRSPALHVPFYQKLY----LDLLAIVLVTSIVLRFI 232
           RP S G  +VH+ +  +K     H+      V   Q++     +DLLA   +TS+ L F+
Sbjct: 234 RPESIGTSIVHYAQTALKGIERRHVWDSGPLVGDNQRVIVETLIDLLATEKITSVTLSFL 293

Query: 233 F 235
           F
Sbjct: 294 F 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,009,220
Number of Sequences: 37544
Number of extensions: 289099
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)