Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0313
(745 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05) 55 5e-08
SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_22264| Best HMM Match : UDPGT (HMM E-Value=6.4e-11) 45 6e-05
SB_44570| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_26422| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_44571| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004) 41 0.001
SB_58589| Best HMM Match : ATP-cone (HMM E-Value=2.2) 36 0.035
SB_9495| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_37303| Best HMM Match : Spc97_Spc98 (HMM E-Value=0) 30 2.3
SB_35229| Best HMM Match : Asparaginase_2 (HMM E-Value=3.2e-05) 28 7.0
SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01) 28 7.0
SB_34160| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05)
Length = 261
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/83 (31%), Positives = 43/83 (51%)
Frame = +2
Query: 2 EMINNSRYIEKIKELSLIYHDRPVSPGAELVHWVEHVVKTKGALHLRSPALHVPFYQKLY 181
E+I Y E +S + D+P +P E W+E+V++ G HLR +PFYQ
Sbjct: 163 ELIEKPCYKENALRVSRLMEDKPQTPQQEGAFWIEYVIRNNGTQHLRPSGRDLPFYQYFL 222
Query: 182 LDLLAIVLVTSIVLRFIFKNIHC 250
LD++ + +I+ F+F + C
Sbjct: 223 LDVM--LFFGTIISIFVFMLVKC 243
>SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 54.0 bits (124), Expect = 1e-07
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Frame = +2
Query: 5 MINNSRYIEKIKELSLIYHDRPVSPGAELVHWVEHVVKTKGALHLRSPALHVPFYQKLYL 184
+I+ R+ E +S + DR SP E W+E+ ++ HLR ++H+ +YQ L
Sbjct: 459 VIDEKRFKENAARISRLMQDRKRSPTEEGADWIEYTLRHGRLTHLRPASVHLSWYQYFLL 518
Query: 185 DLL----AIVLVTSIVLRFIFKNIH---CNVQFKDKIQ 277
D++ ++L +IV+ +FK I+ C Q K+K Q
Sbjct: 519 DVMLFMGVVLLSVAIVIWLVFKLIYPCCCRTQTKNKTQ 556
>SB_22264| Best HMM Match : UDPGT (HMM E-Value=6.4e-11)
Length = 385
Score = 45.2 bits (102), Expect = 6e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 5 MINNSRYIEKIKELSLIYHDRPVSPGAELVHWVEHVVKTKGALHLRSPALHVPFYQKLYL 184
++ RY E +S + RP +P E VE+V HLR +PFYQ L
Sbjct: 287 VLKGKRYHENSARVSRVMRKRPRAPVVEAADLVEYVQALGHMGHLRPHGFSLPFYQLYML 346
Query: 185 DLLAIVLVTSIVL 223
D+LA++++ ++L
Sbjct: 347 DVLAVLVMALLIL 359
>SB_44570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +2
Query: 5 MINNSRYIEKIKELSLIYHDRPVSPGAELVHWVEHVVKTKGALHLRSPALHVPFYQKLYL 184
+I+ R+ E +S + DR SP E W+E+ ++ HLR ++H+ +YQ L
Sbjct: 592 VIDEPRFKENAVRISRLMQDRRRSPTEEAADWIEYTLRHGRLTHLRPASIHLTWYQYFLL 651
Query: 185 DL---LAIVLVTSIVLR 226
D+ + +VL++ +L+
Sbjct: 652 DVMLFMGVVLLSVAMLQ 668
>SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +2
Query: 5 MINNSRYIEKIKELSLIYHDRPVSPGAELVHWVEHVVKTKGALHLRSPALHVPFYQKLYL 184
+I+ + E +S + DR SP E W+E+ ++ HLR ++H+ +YQ L
Sbjct: 380 VIDEPGFKENAARISRLMRDRRRSPTQEAADWIEYTLRHGNLTHLRPASVHLTWYQYFLL 439
Query: 185 DLLAI--VLVTSIVLR 226
D++ V++ S+ +R
Sbjct: 440 DVMLFMGVVLLSVAMR 455
>SB_26422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 536
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +2
Query: 2 EMINNSRYIEKIKELSLIYHDRPVSPGAELVHWVEHVVKTKGALHLRSPALHVPFYQKLY 181
++IN+ Y +S RP P E +VE+V+ HL+ +L +PFYQ
Sbjct: 440 KVINDDSYKTNGARVSRAMKSRPREPVKEAADFVEYVLAQGHLPHLKPRSLAMPFYQVYM 499
Query: 182 LDLLAIVLVTSIVLRFIFKNI 244
LD++A++ +V + K +
Sbjct: 500 LDVMAVIGAVILVFIALIKTL 520
>SB_44571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +2
Query: 5 MINNSRYIEKIKELSLIYHDRPVSPGAELVHWVEHVVKTKGALHLRSPALHVPFYQKLYL 184
+++ R+ E +S + DR SP E W+E+ ++ + HL ++H+ +YQ L
Sbjct: 313 VVDEPRFKENAARISRLMQDRRRSPTEEAADWIEYTLRHRRLTHLCPASVHLTWYQYFLL 372
Query: 185 DLL 193
D +
Sbjct: 373 DCI 375
>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
Length = 969
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +2
Query: 5 MINNSRYIEKIKELSLIYHDRPVSPGAELVHWVEHVVKTKGALHLRSPALHVPFYQKLYL 184
++ RY E +S + RP +P E VE+V HLR +PFYQ L
Sbjct: 197 VLKGKRYHENSARVSRVMRKRPRAPVVEAADLVEYVQALGHMGHLRPHGFSLPFYQLYML 256
Query: 185 DLLAI 199
D+LA+
Sbjct: 257 DVLAL 261
>SB_58589| Best HMM Match : ATP-cone (HMM E-Value=2.2)
Length = 360
Score = 35.9 bits (79), Expect = 0.035
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = +2
Query: 5 MINNSRYIEKIKELSLIYHDRPVSPGAELVHWVEHVVKTKGALHLRSPALHVPFYQKLYL 184
++ R+ E +S R +P AE VE+V HL+ +P YQ L
Sbjct: 266 VLTQGRFKESSARISKAMKRRLRAPVAEAADLVEYVQALGHVDHLKPRGFSMPIYQLYML 325
Query: 185 DLLAIVLVTSIVLRFIFK 238
D+LA+++V I + + K
Sbjct: 326 DVLAVLVVAFISIVAVVK 343
>SB_9495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +2
Query: 2 EMINNSRYIEKIKELSLIYHDRPVSPGAELVHWVEHVVKTKGALHLRSPALHVPFYQKLY 181
E+I N R +S I R +P E VE+V+ HL+ + +PFY+
Sbjct: 555 EVITNPRL--NAARVSHILKSRQRAPVEEAADHVEYVLAAGHVTHLKPRSQSMPFYRVYM 612
Query: 182 LDLLAIVLVTSIVLRFIF 235
LD++A++ + + +F
Sbjct: 613 LDVMAVLGLALAIAMCVF 630
>SB_37303| Best HMM Match : Spc97_Spc98 (HMM E-Value=0)
Length = 661
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +2
Query: 8 INNSRYIEKIKELSLIYHDRPVSPGAELVHWVEHV 112
+ NSR+IE I ELS I H + + G+E+VH++ +
Sbjct: 621 MENSRFIETIPELSPILH-QCHTLGSEMVHFIHQM 654
>SB_35229| Best HMM Match : Asparaginase_2 (HMM E-Value=3.2e-05)
Length = 477
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 351 KTIYLQGFATSTNKNTKPIQ*YHYH 277
K +Y++ F T N+NT+ I +H H
Sbjct: 59 KAVYVRRFTTKCNRNTRTITTWHKH 83
>SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01)
Length = 738
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 140 RSPALH-VPFYQKLYLDLLAIVLVTSIVLRFIFKNIHCNVQFKDKI 274
R P H V Y L L L A VLV ++L + + HCN K+
Sbjct: 459 REPLCHRVILYIVLLLSLTASVLVVLMILGILGPSCHCNNSTNAKV 504
>SB_34160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.9 bits (59), Expect = 9.2
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = -2
Query: 162 GTCSAGDRRWRAPLVLTTCST 100
G+ + D+RW+ P+ ++TC++
Sbjct: 58 GSATGADQRWKVPVCISTCTS 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,491,551
Number of Sequences: 59808
Number of extensions: 370533
Number of successful extensions: 791
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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