Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0313
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    26   0.32 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    26   0.32 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.57 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.2  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 310 FVGRCRKTLQIYCFICSYLFIQVLEVSCTFKNKFY 414
           FVG CRKT QI  FI   L   ++  S T+ N+ +
Sbjct: 272 FVGSCRKTDQILYFIRGCLQTYLINAS-TYLNEVH 305


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 310 FVGRCRKTLQIYCFICSYLFIQVLEVSCTFKNKFY 414
           FVG CRKT QI  FI   L   ++  S T+ N+ +
Sbjct: 310 FVGSCRKTDQILYFIRGCLQTYLINAS-TYLNEVH 343


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +2

Query: 386 LAALSKINFITSYFN*SDTRTDA--DSKFTMNIKLLISLFSFVLTCDCYKILIVFTTP 553
           ++AL  + FI  +   +D   +   D KF   +   + L+ F L C    + I+F  P
Sbjct: 448 ISALKGVRFIAQHIKNADKDNEVIEDWKFVAMVLDRLFLWVFTLACTAGTLGIIFQAP 505


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 364 NTNK*NNISARFCDIYQQKYKTYTI 290
           N N  NN +  + + Y++ YK Y I
Sbjct: 98  NNNYNNNYNNNYNNNYKKLYKNYII 122


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 364 NTNK*NNISARFCDIYQQKYKTYTI 290
           N N  NN +  + + Y++ YK Y I
Sbjct: 98  NNNYNNNYNNNYNNNYKKLYKNYII 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,032
Number of Sequences: 438
Number of extensions: 4050
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)