Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0313
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27360.1 68418.m03267 sugar-porter family protein 2 (SFP2) id...    28   5.7  
At3g57140.2 68416.m06362 patatin-related contains Patatin domain...    28   5.7  
At3g57140.1 68416.m06361 patatin-related contains Patatin domain...    28   5.7  

>At5g27360.1 68418.m03267 sugar-porter family protein 2 (SFP2)
           identical to sugar-porter family protein 2 [Arabidopsis
           thaliana] GI:14585701
          Length = 478

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 349 NNISARFCDIYQQKYKTYTIISLSLNFI 266
           N+  + FCD++Q+KY+   ++ + L  I
Sbjct: 253 NDSKSSFCDLFQRKYRYTLVVGIGLMLI 280


>At3g57140.2 68416.m06362 patatin-related contains Patatin domain
           PF01734
          Length = 801

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 329 LRHLPTKIQNLYNNITITEFY 267
           +RHL  K++NL NN+T  E Y
Sbjct: 319 IRHLQWKLRNLTNNLTFQEAY 339


>At3g57140.1 68416.m06361 patatin-related contains Patatin domain
           PF01734
          Length = 801

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 329 LRHLPTKIQNLYNNITITEFY 267
           +RHL  K++NL NN+T  E Y
Sbjct: 319 IRHLQWKLRNLTNNLTFQEAY 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,295,639
Number of Sequences: 28952
Number of extensions: 248445
Number of successful extensions: 503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)