Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0311
         (723 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54EB9 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_Q058C6 Cluster: Flagellar motor switch protein; n=2; ce...    33   5.4  
UniRef50_Q4RV77 Cluster: Chromosome 15 SCAF14992, whole genome s...    33   9.4  
UniRef50_A7I0M6 Cluster: Putative periplasmic protein; n=1; Camp...    33   9.4  
UniRef50_A2DLR3 Cluster: Putative uncharacterized protein; n=1; ...    33   9.4  
UniRef50_A5E2Q8 Cluster: Putative uncharacterized protein; n=1; ...    33   9.4  

>UniRef50_Q54EB9 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 129

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +2

Query: 140 LNIYKSTFIKCVNVLYIDVFSLYAALNTSRKCV-L***CLKLINSFCNTNCRTCCILSLL 316
           +NI K      + +L  ++ ++   + +S  C  +   C ++  +  N+NC T C+++L 
Sbjct: 1   MNIVKILSKLLITLLIFNIININNGIVSSTSCQQIFDACERMCGN--NSNCFTTCLVNLD 58

Query: 317 YAHEKLSNEYFITTCRQTDKNP 382
           YAH  ++N +      Q + NP
Sbjct: 59  YAHCTINNNFHEEKSNQLNSNP 80


>UniRef50_Q058C6 Cluster: Flagellar motor switch protein; n=2;
           cellular organisms|Rep: Flagellar motor switch protein -
           Buchnera aphidicola subsp. Cinara cedri
          Length = 324

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 24/97 (24%), Positives = 45/97 (46%)
 Frame = -1

Query: 477 YITILK*SNIKFGQRLGFADVHDQTVITHDQMGFLSVCLQVVIKYSLLSFS*AYNSDNIQ 298
           Y+TI K    KF   L F++ + + +I ++ +  L + L +   +    F    +S    
Sbjct: 227 YLTISK--YFKFENILNFSNKNIKFIIKNNNIKNLCIILNISNNFIKKKFISNMSSIEYN 284

Query: 297 QVRQFVLQNELISFKHYYYKTHLRLVFSAAYNENTSI 187
             ++++ +N  ISF+  Y+K +L L     Y  N  I
Sbjct: 285 YFKKYIQKNNCISFEKMYFKKNLLLENIKRYIRNGKI 321


>UniRef50_Q4RV77 Cluster: Chromosome 15 SCAF14992, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 15
           SCAF14992, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 1384

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +2

Query: 134 TRLNIYKSTFIKCVNVLYIDVFSLYAALNTSRKCVL***CLKLINSFCNTNCRTCCILSL 313
           T L+ Y ST I+  ++   +  SL  +L            L+L+  FC  N   CC  +L
Sbjct: 256 TLLHFYCSTVIRLDDICLKETMSLADSLYN----------LQLVQEFCKNNLNHCCHFTL 305

Query: 314 ---LYAHEKLSNEYFI 352
              LYAH  + + Y +
Sbjct: 306 EDMLYAHASIKSNYLV 321


>UniRef50_A7I0M6 Cluster: Putative periplasmic protein; n=1;
           Campylobacter hominis ATCC BAA-381|Rep: Putative
           periplasmic protein - Campylobacter hominis (strain ATCC
           BAA-381 / LMG 19568 / NCTC 13146 /CH001A)
          Length = 122

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -3

Query: 544 KHMVKQTLKIDLNIR*KNFECELYYNIEIIKY 449
           KH+VK  +K DLNI+    +CE+  N E+IK+
Sbjct: 9   KHVVKTDIKCDLNIK----DCEILQNNEVIKF 36


>UniRef50_A2DLR3 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1170

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
 Frame = +2

Query: 413 WTSAKPSRCPNLIFDYFN-IVI*FAFKIFSSNIKVNFKSLLDHVFYKTSTGCANNAY--- 580
           W S+K S  PN+ FD+FN ++  F   + +  I     +L+ H  +    G   +     
Sbjct: 416 WVSSKISGRPNIEFDFFNRVLTSFENTMDNGYISQVLLALMCHAPFSGFDGAKRSVILLS 475

Query: 581 KLEFYSQSNLNEMSWFFFAYHN*FCNIEQAN*LSLDCIRFLNYILVS 721
           +L   SQSN N +S     +H  F  +   + LS + +  ++YI+VS
Sbjct: 476 QLAARSQSNRNMLSKISI-FHAFFARL--VSNLSAEELHSISYIVVS 519


>UniRef50_A5E2Q8 Cluster: Putative uncharacterized protein; n=1;
            Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
            uncharacterized protein - Lodderomyces elongisporus
            (Yeast) (Saccharomyces elongisporus)
          Length = 2471

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
 Frame = -1

Query: 375  LSVCLQVVIKYSLLSFS*AYNSDNIQQVRQ---FVLQNELISFKHYYYKTHLRLVFSAAY 205
            L +C Q ++KY++LS     N++ +QQ+++   +++Q +L +      KT L+L F A +
Sbjct: 1378 LRLC-QHLLKYAVLSHIMTLNTEVVQQIKEEFLYIMQVDLNALSSEERKTQLKLCFQAVF 1436


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,436,854
Number of Sequences: 1657284
Number of extensions: 11575727
Number of successful extensions: 23970
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23967
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)