Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0311
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6911| Best HMM Match : Ank (HMM E-Value=0)                          29   5.0  
SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)              28   8.8  
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      28   8.8  

>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1961

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +3

Query: 477 NSHSKFFHRILRSILRVCLTMCFTKLRPVVQIMH 578
           +S S +++ ILR++ R+ + + F++ R  VQ+ H
Sbjct: 686 SSDSNYYYDILRTLDRLSMFLHFSRQRETVQVFH 719


>SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)
          Length = 895

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = +2

Query: 35  IDLYLTSNSCLLSRYGISEFP*TPNYRVDSRP*TRLNIYKSTFIKCVNVLYIDVFSLYAA 214
           +D+YLT + CLL  Y +        Y V +R    L +Y ST  +C+    +DV+S + +
Sbjct: 774 LDVYLTFSRCLLDGYSVFTRCLLDVYTVFTR--RLLGVY-STVTRCL----LDVYSAFYS 826

Query: 215 LNTSR 229
           + T R
Sbjct: 827 VFTRR 831


>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 488  KIFSSNIKVNFKSLLDHVFYKTSTGCANNAYKL 586
            K+F S+I V ++  L  V  +    CAN  YKL
Sbjct: 2135 KLFDSSIAVAYRKCLLPVTVEPRANCANTPYKL 2167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,610,112
Number of Sequences: 59808
Number of extensions: 363805
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)