Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0311
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    28   0.10 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.7  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   8.9  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 362 YKW**NTRCLVSRERIIVIIYNRSDNLYYKMN*LVLNIII 243
           + W   + C   + RII ++YN S+N   +   LV N I+
Sbjct: 65  FSW--GSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIV 102


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 587 EFYSQSNLNEMSWFFFAYHN*--FCNIEQAN*LSLDCIRFLNYIL 715
           + YSQS   E+   F +  N   F + E  N   L+C+RFLN ++
Sbjct: 778 DLYSQSYA-EVGVLFASMPNFADFYSEESINNQGLECLRFLNEVI 821


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 323 ERIIVIIYNRSDNLYYKM 270
           E   +IIYN SDN + ++
Sbjct: 207 EGFALIIYNNSDNSFQRL 224


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = -3

Query: 484 CELYYNIEIIKYQIWAAARLC*CP*SDSDHSRSDGIFVSLSTSGDK 347
           C  Y  +++   +IW   R C C     +   S  +F   +  G+K
Sbjct: 57  CSSY--LQVSGSKIWQMERSCMCCQESGEREASVSLFCPRAKPGEK 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,116
Number of Sequences: 438
Number of extensions: 3486
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)