Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0309
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622...    31   1.2  
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733...    31   1.5  
09_02_0193 - 5626819-5627078,5627177-5627561                           30   2.0  
11_04_0351 + 16666398-16666532,16666911-16667048,16667398-166683...    28   8.2  
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442...    28   8.2  

>08_01_0704 +
           6219530-6219609,6221595-6222243,6222339-6222437,
           6222521-6222616,6222750-6222848,6222929-6223027,
           6223811-6223882,6224508-6224597,6225173-6227329
          Length = 1146

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 27/111 (24%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
 Frame = +2

Query: 419 SKIQFDCMNAISSLQSQH-DNNIKKFASVSYLTSSRQSR-SKRGLLDFGGSVLKTFFGTL 592
           ++I  D  NA+S LQS H D  ++      Y+T+  QS+ S+   ++   +  +   G L
Sbjct: 624 NQILTDQENAVSQLQSSHTDYFVQIRPRQEYVTNYSQSQLSRAATVNQIETNQRNMSGQL 683

Query: 593 DSNDGVKFSDAIDQVQSDEKALAHLMRDNIHVIKSTISTFNNSMLKFSENE 745
            S+     +D++DQ+Q+++++ A  ++ +     + I T    + + SE++
Sbjct: 684 QSSQ----ADSLDQIQTEQESSASRLQSSQADSFNEIHTIQEYITEQSESQ 730


>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
            28273455-28274791,28275451-28275848,28275963-28277644,
            28277727-28277884,28278645-28278802,28279110-28279270,
            28279826-28280014
          Length = 1524

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 326  TYLNTNNIQSHLDKVDQLFEKVNSFCKDFESSKIQFDCMNAISSLQSQHDNNI 484
            T  NTNN+QS +   + + + V    K  ES       MN  S   S  DN +
Sbjct: 1043 TCANTNNMQSLVKNTEVIVDNVRQARKSHESMLASEPVMNGFSQGNSDKDNEL 1095


>09_02_0193 - 5626819-5627078,5627177-5627561
          Length = 214

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 317 NVVTYLNTNNIQSHLDKVDQLFEKVNSFCKDFESSKIQFDCMNAISSL 460
           NV   +  +N+Q  + K  +LF+K++    DF+ S +Q D  N I SL
Sbjct: 13  NVCAEIAQDNLQDDVKKTMELFQKLSKSDPDFKFS-VQLDEENKIKSL 59


>11_04_0351 +
           16666398-16666532,16666911-16667048,16667398-16668306,
           16668383-16668511,16668774-16668996,16669085-16669231,
           16669332-16669573,16669660-16669689,16669784-16669865,
           16669968-16670128,16670775-16670898,16671206-16671414
          Length = 842

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 20/82 (24%), Positives = 39/82 (47%)
 Frame = +2

Query: 563 SVLKTFFGTLDSNDGVKFSDAIDQVQSDEKALAHLMRDNIHVIKSTISTFNNSMLKFSEN 742
           S L+T+FG   +  G +FSDA D ++  +  +A     +    +S I    +++L  S  
Sbjct: 568 SNLRTYFGRRSAMVGYEFSDA-DSIRESDIGIAVADATDSTKSESDIVLTEHALLCVSSA 626

Query: 743 EKRLNKNLEIINSAFEYIINST 808
            +   +  +I+     Y ++ST
Sbjct: 627 VQTSREICQIMKGCMVYAVSST 648


>02_02_0421 -
           10042184-10042197,10042442-10042822,10044158-10044261,
           10044634-10044734,10044806-10045147,10045981-10046158,
           10047696-10047776,10049190-10049449
          Length = 486

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 714 LNVEIVDFITCILSRIRCAKAFSSDCTWSIASENL-TPSLESRVPKNVLRTEPPKSSSP 541
           L + ++ +  C  +R+ C     S C   I +EN+   ++E+ + +N L  +P   +SP
Sbjct: 108 LMIRMLLYCECFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQPKIENSP 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,938,152
Number of Sequences: 37544
Number of extensions: 297445
Number of successful extensions: 730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)