Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0309
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53137| Best HMM Match : ABC_membrane_2 (HMM E-Value=1.2e-07)        33   0.22 
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.68 
SB_31296| Best HMM Match : Pepsin-I3 (HMM E-Value=2.2)                 32   0.68 
SB_31231| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.68 
SB_21500| Best HMM Match : GIY-YIG (HMM E-Value=4.4)                   32   0.68 
SB_39194| Best HMM Match : Pepsin-I3 (HMM E-Value=2.2)                 32   0.68 
SB_38851| Best HMM Match : RVT_1 (HMM E-Value=9.8e-20)                 32   0.68 
SB_37265| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.68 
SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.68 
SB_7666| Best HMM Match : Cps15 (HMM E-Value=0.93)                     32   0.68 
SB_21807| Best HMM Match : JmjC (HMM E-Value=4.2)                      30   2.7  
SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)                   29   4.8  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      29   4.8  
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_17247| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_53137| Best HMM Match : ABC_membrane_2 (HMM E-Value=1.2e-07)
          Length = 139

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 704 STFNNSMLKFSENEKRLNKNLEIINSAFE-YIINST 808
           +TF NSM++F EN   L+   E++N A+E Y  N T
Sbjct: 46  ATFINSMIRFLENRIALSFRTELVNHAYEKYFANQT 81


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 335  NTNNIQSHLDKVDQLFEKVNSFCKDFESS--KIQFDCMNAISSLQSQHDNNIKKFASVSY 508
            +TN     L  +D+ F K N   K F  +  KI + CMN    +   H+  I   +S + 
Sbjct: 1801 STNIGHRFLTLIDKHFPKDNHLRKIFNRNTIKISYSCMNNTKQIIDNHNKRIITASSATE 1860

Query: 509  LTSS 520
            +TSS
Sbjct: 1861 ITSS 1864


>SB_31296| Best HMM Match : Pepsin-I3 (HMM E-Value=2.2)
          Length = 707

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 335 NTNNIQSHLDKVDQLFEKVNSFCKDFESS--KIQFDCMNAISSLQSQHDNNIKKFASVSY 508
           +TN     L  +D+ F K N   K F  +  KI + CMN    +   H+  I   +S + 
Sbjct: 494 STNIGHRFLTLIDKHFPKDNHLRKIFNRNTIKISYSCMNNTKQIIDNHNKRIITASSATE 553

Query: 509 LTSS 520
           +TSS
Sbjct: 554 ITSS 557


>SB_31231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 335 NTNNIQSHLDKVDQLFEKVNSFCKDFESS--KIQFDCMNAISSLQSQHDNNIKKFASVSY 508
           +TN     L  +D+ F K N   K F  +  KI + CMN    +   H+  I   +S + 
Sbjct: 182 STNIGHRFLTLIDKHFPKDNHLRKIFNRNTIKISYSCMNNTKQIIDNHNKRIITASSATE 241

Query: 509 LTSS 520
           +TSS
Sbjct: 242 ITSS 245


>SB_21500| Best HMM Match : GIY-YIG (HMM E-Value=4.4)
          Length = 440

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 335 NTNNIQSHLDKVDQLFEKVNSFCKDFESS--KIQFDCMNAISSLQSQHDNNIKKFASVSY 508
           +TN     L  +D+ F K N   K F  +  KI + CMN    +   H+  I   +S + 
Sbjct: 199 STNIGHRFLTLIDKHFPKDNHLRKIFNRNTIKISYSCMNNTKQIIDNHNKRIITASSATE 258

Query: 509 LTSS 520
           +TSS
Sbjct: 259 ITSS 262


>SB_39194| Best HMM Match : Pepsin-I3 (HMM E-Value=2.2)
          Length = 603

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 335 NTNNIQSHLDKVDQLFEKVNSFCKDFESS--KIQFDCMNAISSLQSQHDNNIKKFASVSY 508
           +TN     L  +D+ F K N   K F  +  KI + CMN    +   H+  I   +S + 
Sbjct: 483 STNIGHRFLTLIDKHFPKDNHLRKIFNRNTIKISYSCMNNTKQIIDNHNKRIITASSATE 542

Query: 509 LTSS 520
           +TSS
Sbjct: 543 ITSS 546


>SB_38851| Best HMM Match : RVT_1 (HMM E-Value=9.8e-20)
          Length = 838

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 335 NTNNIQSHLDKVDQLFEKVNSFCKDFESS--KIQFDCMNAISSLQSQHDNNIKKFASVSY 508
           +TN     L  +D+ F K N   K F  +  KI + CMN    +   H+  I   +S + 
Sbjct: 625 STNIGHRFLTLIDKHFPKDNHLRKIFNRNTIKISYSCMNNTKQIIDNHNKRIITASSATE 684

Query: 509 LTSS 520
           +TSS
Sbjct: 685 ITSS 688


>SB_37265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 335 NTNNIQSHLDKVDQLFEKVNSFCKDFESS--KIQFDCMNAISSLQSQHDNNIKKFASVSY 508
           +TN     L  +D+ F K N   K F  +  KI + CMN    +   H+  I   +S + 
Sbjct: 157 STNIGHRFLTLIDKHFPKDNHLRKIFNRNTIKISYSCMNNTKQIIDNHNKRIITASSATE 216

Query: 509 LTSS 520
           +TSS
Sbjct: 217 ITSS 220


>SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 922

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 335 NTNNIQSHLDKVDQLFEKVNSFCKDFESS--KIQFDCMNAISSLQSQHDNNIKKFASVSY 508
           +TN     L  +D+ F K N   K F  +  KI + CMN    +   H+  I   +S + 
Sbjct: 773 STNIGHRFLTLIDKHFPKDNHLRKIFNRNTIKISYSCMNNTKQIIDNHNKRIITASSATE 832

Query: 509 LTSS 520
           +TSS
Sbjct: 833 ITSS 836


>SB_7666| Best HMM Match : Cps15 (HMM E-Value=0.93)
          Length = 1062

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 335  NTNNIQSHLDKVDQLFEKVNSFCKDFESS--KIQFDCMNAISSLQSQHDNNIKKFASVSY 508
            +TN     L  +D+ F K N   K F  +  KI + CMN    +   H+  I   +S + 
Sbjct: 849  STNIGHRFLTLIDKHFPKDNHLRKIFNRNTIKISYSCMNNTKQIIDNHNKRIITASSATE 908

Query: 509  LTSS 520
            +TSS
Sbjct: 909  ITSS 912


>SB_21807| Best HMM Match : JmjC (HMM E-Value=4.2)
          Length = 329

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 398 FCKDFESSKIQFDCMNAISSLQSQHDNNIKKFASVSYLTSS 520
           F KD  + KI + CMN    +   H+  I   +S + +TSS
Sbjct: 172 FPKDRNTIKISYSCMNNTKQIIDNHNKRIITASSATEITSS 212


>SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)
          Length = 729

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +2

Query: 515 SSRQSRSKRGLLDFGGSVLKTFFGTLDSNDGVKFSDAIDQVQSDEKALAHLMRDNIHVIK 694
           +S+ S +K  +  +      TF+ T   +D  K   A+D +Q   +A   L  DN+H IK
Sbjct: 443 TSKSSDNKEKIRSWIKEQAVTFYSTYFDDDSGKSHPALDVMQKLIEATKSLGLDNLHDIK 502

Query: 695 S 697
           +
Sbjct: 503 A 503


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 347 IQSHLDKVDQLFEKVNSFCKDFES-SKIQFDCMNAISSLQSQHDNNIKKFASVSYLTSSR 523
           I SHL+ V +   +++  C +  +  +I+ + +N ISSL    D NI+K      L    
Sbjct: 182 IPSHLNAVGEKSSEISLECPEILNVDEIEDEPINEISSLVDFVDENIEKSLLKDPLWQDE 241

Query: 524 QSRSKR 541
           + + KR
Sbjct: 242 EEKGKR 247


>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/50 (20%), Positives = 32/50 (64%)
 Frame = +2

Query: 629 DQVQSDEKALAHLMRDNIHVIKSTISTFNNSMLKFSENEKRLNKNLEIIN 778
           DQ + + +A+AH+ RD++ ++++ +   + ++++  +  +  N+  E++N
Sbjct: 270 DQEERELEAIAHV-RDSVQMVENAVLERDQAVIREKQKTQEANRLQEVVN 318


>SB_17247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 362 DKVDQLFEKVNSFCKDFESSKIQFDCMNAISSLQSQHDNNIK 487
           DK+D++  K+N   K+ ++  +    MN +  L+ + DN I+
Sbjct: 63  DKIDEVLRKLNELLKEIDN--LDMVDMNKLDELEKKLDNEIE 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,827,043
Number of Sequences: 59808
Number of extensions: 381084
Number of successful extensions: 926
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)