Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0309
(848 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16580.1 68416.m02120 F-box family protein contains F-box dom... 30 1.7
At4g04630.1 68417.m00677 expressed protein contains Pfam profile... 30 2.2
At1g68800.1 68414.m07865 TCP family transcription factor, putati... 30 2.2
At3g11670.2 68416.m01431 digalactosyldiacylglycerol synthase 1 (... 29 3.9
At3g11670.1 68416.m01430 digalactosyldiacylglycerol synthase 1 (... 29 3.9
At5g26630.1 68418.m03177 MADS-box protein (AGL35) homeotic prote... 29 5.2
At4g35420.1 68417.m05031 dihydroflavonol 4-reductase family / di... 28 6.8
At3g05390.1 68416.m00589 expressed protein ; expression supporte... 28 9.0
>At3g16580.1 68416.m02120 F-box family protein contains F-box domain
Pfam:PF00646
Length = 382
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 275 YDRLSDVKFTNDNWNVVTYLNTNNIQSHLDKVDQLFEKVNSFC 403
Y ++S V N N +VTY T ++ HL +++ E V FC
Sbjct: 195 YTKISGVSL-NGNLYLVTYFETTDLVYHLIEINSSSESVVKFC 236
>At4g04630.1 68417.m00677 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584
Length = 168
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 651 FSSDCTWSIASENLTPSLESRVPKNVLRTEPPKSSSP 541
F + WS+ E T S E ++PK+ + SSSP
Sbjct: 27 FQEEDVWSVLREGETSSPEMKIPKSHFSSSSSSSSSP 63
>At1g68800.1 68414.m07865 TCP family transcription factor, putative
similar to cyc2 protein [Misopates orontium]; residues
80 to 140 nearly identical to cyc1a protein (nuclear
flower development gene cycloidea) GB:AAF07239
[Antirrhinum siculum]
Length = 317
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/107 (22%), Positives = 43/107 (40%)
Frame = +2
Query: 362 DKVDQLFEKVNSFCKDFESSKIQFDCMNAISSLQSQHDNNIKKFASVSYLTSSRQSRSKR 541
D + E FCK E K C++ +S + Q +KK S + +++ R +R
Sbjct: 48 DVAANVVESPWKFCKKLELKKKNEKCVDGSTSQEVQWRRTVKKRDRHSKICTAQGPRDRR 107
Query: 542 GLLDFGGSVLKTFFGTLDSNDGVKFSDAIDQVQSDEKALAHLMRDNI 682
L + + FF D K S I+ + S K +++ +
Sbjct: 108 MRLSL--QIARKFFDLQDMLGFDKASKTIEWLFSKSKTSIKQLKERV 152
>At3g11670.2 68416.m01431 digalactosyldiacylglycerol synthase 1
(DGD1) / MGDG:MGDG galactosyltransferase / galactolipid
galactosyltransferase identical to
digalactosyldiacylglycerol synthase (DGD1) GI:5354158
[Arabidopsis thaliana]
Length = 639
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 587 TLDSNDGVKF-SDAIDQVQSDEKALAHLMRDNIHVIKSTISTFNNSMLKFSENEKR 751
TL S + + F S +V A LMRD + +K+ STF+ + F N R
Sbjct: 27 TLSSTNALSFLSKGWREVWDSADADLQLMRDRANSVKNLASTFDREIENFLNNSAR 82
>At3g11670.1 68416.m01430 digalactosyldiacylglycerol synthase 1
(DGD1) / MGDG:MGDG galactosyltransferase / galactolipid
galactosyltransferase identical to
digalactosyldiacylglycerol synthase (DGD1) GI:5354158
[Arabidopsis thaliana]
Length = 808
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 587 TLDSNDGVKF-SDAIDQVQSDEKALAHLMRDNIHVIKSTISTFNNSMLKFSENEKR 751
TL S + + F S +V A LMRD + +K+ STF+ + F N R
Sbjct: 27 TLSSTNALSFLSKGWREVWDSADADLQLMRDRANSVKNLASTFDREIENFLNNSAR 82
>At5g26630.1 68418.m03177 MADS-box protein (AGL35) homeotic protein
boi1AP3, Brassica oleracea, EMBL:U67453; contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 218
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +2
Query: 347 IQSHLDKVDQLFEKVNSFCKDFESSKIQFDCMNAISSLQSQHDNNIKKFASV 502
+Q + K + ++K+ K+ E I FDC++ + + S ++ F V
Sbjct: 90 LQQRITKATESWKKLRKENKELEMKNIMFDCLSGKTLVSSIEKTELRDFGYV 141
>At4g35420.1 68417.m05031 dihydroflavonol 4-reductase family /
dihydrokaempferol 4-reductase family similar to
dihydroflavonol 4-reductase (Rosa hybrid cultivar,
GI:1332411), CPRD14 protein (Vigna unguiculata,
GI:1854445)
Length = 326
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 368 VDQLFEKVNSFCKDFESSKIQFDCMNAISSLQSQHDNNIKKFASVSYLTS 517
+ + FEK+N DF++SKIQ + SL+ D+ I YL++
Sbjct: 275 IPKRFEKLNRLHYDFDTSKIQSLGLK-FKSLEEMFDDCIASLVEQGYLST 323
>At3g05390.1 68416.m00589 expressed protein ; expression supported
by MPSS
Length = 463
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 341 NNIQSHLDKVDQLFEKVNSFCKDFESSK 424
+ + L+K+D L+EK+ KD E SK
Sbjct: 71 DRVDEVLEKMDNLYEKLEKTVKDMEKSK 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,824,922
Number of Sequences: 28952
Number of extensions: 272506
Number of successful extensions: 741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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