Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0308
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    29   0.74 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.3  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    27   2.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   3.9  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   3.9  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   9.1  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   9.1  
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    25   9.1  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 490 IFPKQNCCEMLCEIF*YVGIWNDGMKPRFPFLLQYVSVLI 371
           +F   N C+ LC++F Y    N  ++   P+LL+Y++V +
Sbjct: 234 LFNHANGCDTLCDLFFYTPYLNT-IQTSCPWLLRYLTVAV 272


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 426 FQIPTYQNISHNISQQFCFGKMLLTLSS 509
           + IP +QN+ HNI+   C  K L T+ S
Sbjct: 414 YSIPVFQNLEHNINIGRCSLKKLSTIRS 441


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +3

Query: 495 LTLSSGAHCT-SMIVQQISGAHPKIQAFIFSAND---PSLAGSFVLFERLL 635
           L  +SGA      + Q ++ ++PK  A +F+ ND    ++A SF LF R +
Sbjct: 434 LFYASGAFLMFQSMFQYLAASYPKYVASVFAGNDLFRSAMAASFPLFARAM 484


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 519 NVRPSLMLIAFFRSKIA-VKCYVKYFDTLEFGMM 421
           N  PSL      R KI+ VK  V+Y+DT  F +M
Sbjct: 634 NSLPSLFADGKLRGKISLVKTLVEYYDTAVFAIM 667


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 269 YC*VESVNRFYFIFHICIA 213
           YC V+  + FYF  H+C+A
Sbjct: 759 YCMVQYTDHFYFRDHLCVA 777


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -1

Query: 601 SDGSFAEKMKACIFGCAPEICWTIMDVQCAPELNVNSIFPKQNCCEML 458
           S   F EK K   F       WT+   QC+P  N + + P  +  E +
Sbjct: 407 SQNVFLEKNKD--FALTSSFDWTVRLWQCSPSRNQHELVPSNDLDEQV 452


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 623 EEDERSGK*RVVCGKNESLYLWVRAGNLL 537
           +E  +SG   V+C  N SLY+ ++ GNLL
Sbjct: 152 DETVKSGP-AVMCLDNASLYIGLKDGNLL 179


>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +2

Query: 545 FRRAPKDTGFHFFRKRPVTCRIVRPLRTPFNNKGLH 652
           F   PKD  FH   K    C   +   TP   K +H
Sbjct: 118 FVDGPKDIRFHMTAKTVGICLAQQKALTPITRKNIH 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,563
Number of Sequences: 5004
Number of extensions: 63907
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)