Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0308
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438...    29   3.1  
09_04_0080 + 14393797-14393894,14395100-14395202,14395307-143954...    28   7.2  
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010           28   7.2  
09_04_0377 + 17086775-17088310                                         28   9.5  

>02_05_1298 -
           35542250-35542831,35543218-35543410,35543511-35543827,
           35544144-35544186,35545845-35545900,35546028-35546102,
           35546249-35546345,35546422-35546546,35547063-35547167,
           35547295-35547432,35547758-35547831,35547995-35548065,
           35548168-35548363,35548482-35548572,35549264-35549342,
           35549431-35549491,35549745-35549814,35549913-35549987,
           35550119-35550194,35550403-35550489,35550744-35550880,
           35551000-35551063,35551351-35551415
          Length = 958

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 559 GCAPEICWTIMDVQCAPELNVNSIFPKQNCCEM 461
           GC  +I WT+  V+ AP L   SI    +CC+M
Sbjct: 794 GC--DIAWTMFIVEAAPRLESLSIRVWDHCCKM 824


>09_04_0080 +
           14393797-14393894,14395100-14395202,14395307-14395427,
           14396208-14396287,14396702-14396878,14396992-14397215,
           14397881-14397887,14398807-14398888,14399188-14399384
          Length = 362

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 397 KMENEASYHHSKFQRIKIFHITFHSNFASEKCY 495
           +  NEA+   S  QR+K++++T   N     CY
Sbjct: 254 RRSNEANGRPSNKQRVKLYYMTLRMNIDCNGCY 286


>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
          Length = 613

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 623 EEDERSGK*RVVCGKNESLYLWVRAGNLLDNHGRTMC 513
           EE+ER+GK      K++   +    G+LLD HG  MC
Sbjct: 62  EEEERTGKAAKAKRKSKIRSVDQLKGHLLDRHGLYMC 98


>09_04_0377 + 17086775-17088310
          Length = 511

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 634 KRRSKRTNDPASDGSFAEKMKACIFGCAP 548
           +R+ +++ND AS+GS  E+  A   G +P
Sbjct: 282 RRKKRKSNDTASEGSSEEEAVAAASGSSP 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,281,624
Number of Sequences: 37544
Number of extensions: 329676
Number of successful extensions: 688
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)