Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0308
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)                   31   1.0  
SB_59018| Best HMM Match : Calx-beta (HMM E-Value=2.2)                 29   5.5  
SB_38691| Best HMM Match : UPF0014 (HMM E-Value=2.2)                   29   5.5  
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          28   7.3  

>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 423 SFQIPTYQNISHNISQQFCFGKMLLTLSSGAHCTSMIVQQ---ISGAHPKIQAFIF 581
           SF+      +   +S+   +G ++LT + G       +++   +SGAHP+ + F+F
Sbjct: 41  SFEFENLDKLEKMLSEPTEYGGIILTSARGVEAMEKCIEEKISLSGAHPQTKPFLF 96


>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
          Length = 551

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +3

Query: 345 YVFNSMTAWINTE-TYCNKNGKRGFIPSFQIPTYQNISH--NISQQFCFGKMLLTLSSGA 515
           Y F+ M A +N + T  N  G+  + P   I  Y    +   I Q+   G   +TL    
Sbjct: 219 YCFSKMRALLNHKATNVNIEGRNKYTP-LHIAAYLEHRNALEICQKLLDGGANVTLRGSD 277

Query: 516 HCTSMIVQQISGAHPKIQAFIFSAND 593
           H T + V  + GAH  ++ F   +++
Sbjct: 278 HMTPLSVATMKGAHETMELFFKKSHE 303


>SB_59018| Best HMM Match : Calx-beta (HMM E-Value=2.2)
          Length = 291

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 357 SMTAWINTETYCNKNGKRGFIPSFQIPTYQNISHNISQQF 476
           + TA +  +T  +  G   F P +QIP   N SHNIS  F
Sbjct: 132 NFTALLIPQTIASLPGMPAF-PDWQIPVPVNASHNISMVF 170


>SB_38691| Best HMM Match : UPF0014 (HMM E-Value=2.2)
          Length = 430

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 618 GRTIRQVTGRLRKK*KPVSLGARRKFVGQSWTYNVRPSL 502
           G T R + GR   K +   L A  + VG+SW Y +RPS+
Sbjct: 38  GYTARCLKGR---KHEGTELAAVNEEVGESWRYQLRPSI 73


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +3

Query: 384 TYCNKNGKRGFI---PSFQIPTYQNISHNISQQFCFGKMLL--TLSSGAHC 521
           +YC K  K  F    PSF+ PTY  +  ++ + F   K+++   LS    C
Sbjct: 590 SYCFKTSKIYFDFGNPSFKEPTYNRVEFDMKKMFALTKVIIRGDLSPSKEC 640


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,272,588
Number of Sequences: 59808
Number of extensions: 426199
Number of successful extensions: 1570
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1568
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)