Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0307
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959...    29   3.5  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    29   3.5  
11_02_0105 - 8336309-8336392,8336514-8336579,8337279-8337431,833...    29   4.7  
05_03_0575 - 15643819-15644295                                         29   4.7  
11_06_0632 + 25674807-25675477,25676472-25677861,25677948-256780...    28   8.1  
06_03_1089 - 27521291-27522124                                         28   8.1  
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    28   8.1  
04_04_0509 - 25763685-25764293                                         28   8.1  
02_01_0496 + 3595388-3596185                                           28   8.1  

>07_03_1748 -
           29195037-29195427,29195552-29195679,29195810-29195938,
           29196334-29196412,29196508-29196671,29196754-29196936,
           29197021-29197146,29197237-29197328,29197412-29197508,
           29198013-29198339
          Length = 571

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 108 AQDLPIEVTATTRHTQPSSTWAGPPESP*HVSLPP 4
           A D+P   TAT+    PSS  + PP SP   S+PP
Sbjct: 72  ADDVPTTTTATS---PPSSAPSSPPSSPPAESVPP 103


>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 6   GARTHVRGTPVG-QPRWKTAACGASWPSPRSGGPAPLRRLQRYTPDY 143
           GA   +R +P G + R + A   A   S  S GP P R+ Q+  PDY
Sbjct: 184 GATQQLRLSPSGPRKRQRCAVHDADVESTSSSGPPPRRQRQQPHPDY 230


>11_02_0105 -
           8336309-8336392,8336514-8336579,8337279-8337431,
           8337511-8337633,8337989-8338075,8338832-8338984,
           8339069-8339152,8339252-8339320,8339622-8339705,
           8339836-8340052,8341034-8341239
          Length = 441

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 33  PVGQPRWKTAACGASWPSPRSGGPAPL 113
           P  +P    AA GA+ PSP +GG AP+
Sbjct: 36  PRSRPAAVVAAAGAAAPSPATGGVAPV 62


>05_03_0575 - 15643819-15644295
          Length = 158

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 41 AHRSPPDMCPCPL 3
          +H SPP +CPCPL
Sbjct: 24 SHPSPPTLCPCPL 36


>11_06_0632 +
           25674807-25675477,25676472-25677861,25677948-25678083,
           25678185-25678282,25678470-25678535,25678699-25678827,
           25679570-25679746,25680576-25680614
          Length = 901

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 6   GARTHVRGTPVGQPRWK-TAACGASWPSPRSGGPAP 110
           G R   +  P+   R + T   G++WP+PRS  PAP
Sbjct: 12  GVRPQGKAAPMAASRSRSTTTTGSAWPNPRS-TPAP 46


>06_03_1089 - 27521291-27522124
          Length = 277

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 50  PGLAHRSPPDMCPCPL 3
           P   H SPP  CPCPL
Sbjct: 76  PFFGHPSPPAPCPCPL 91


>06_03_0635 -
           22971502-22973840,22974112-22974403,22974639-22975162,
           22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 42  QPRWKTAACGASWPSPR 92
           QPR + AA GA+WP PR
Sbjct: 124 QPRAEAAAPGAAWPRPR 140


>04_04_0509 - 25763685-25764293
          Length = 202

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 50  PGLAHRSPPDMCPCPL 3
           P   H SPP  CPCPL
Sbjct: 95  PFFGHPSPPAPCPCPL 110


>02_01_0496 + 3595388-3596185
          Length = 265

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 50  PGLAHRSPPDMCPCPL 3
           P   H SPP  CPCPL
Sbjct: 72  PFFGHPSPPAPCPCPL 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,648,034
Number of Sequences: 37544
Number of extensions: 386003
Number of successful extensions: 1068
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)