Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0306
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 29 0.68
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 29 0.68
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 0.90
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.1
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||... 27 2.1
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 2.7
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 26 3.6
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 8.4
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.4
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 28.7 bits (61), Expect = 0.68
Identities = 21/68 (30%), Positives = 28/68 (41%)
Frame = +2
Query: 119 LAAPWGSHIATPLVAAAPVLGAHNYRGPLSLAPGQPANILAADGRPLDTLSVNHDRAVHF 298
L P G+ P A +LG H + S P Q DG+P N D++ +F
Sbjct: 214 LLTPTGAGFPAPSPGTANLLGFHTFD---SQFPDQ-YRFTPRDGKPPVVNGTNGDQSDYF 269
Query: 299 TAKALEHG 322
A A HG
Sbjct: 270 GANAAVHG 277
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 28.7 bits (61), Expect = 0.68
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 541 YPKTTLGFVQYLPNMSQMCSVSQTPMTNRSGQPKWSNRCMGDQTCGRPVDSGDVRPRH 368
YP + + +L + +CS+S N+S +P C +T RP+ G +RP +
Sbjct: 112 YPGLSFNTLAWLTMGTALCSISANAF-NQSMEPMLD--CQMARTRSRPIPRGAIRPEY 166
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 0.90
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = +2
Query: 128 PWGSHIATPLVAAAPV---LGAHNYRGPL--SLAPGQPANILAADGRPLDTLSV--NHDR 286
P G+ A PL +AP+ L A P AP P A P+ +++ D
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDG 499
Query: 287 AVHFTAKALEHGGVHLLKKRSAVLAPAVA 373
+ A GG+ LLK R +P+VA
Sbjct: 500 RANLMASIRASGGMDLLKSRKVSASPSVA 528
>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = -1
Query: 554 ICGYI---SKDYFRFRTIFTKYESNVQR 480
+C Y+ KDY R IFTK SN++R
Sbjct: 92 MCFYVVEEMKDYMRLSIIFTKNRSNLKR 119
>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 327
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 232 YLGSRWQTAGYSQCKPRSCCSFYGKSSGTWWCA 330
YL W T G K + +G S+ T WC+
Sbjct: 254 YLSKEWDTEGNMDAKECLFLAAFGASACTRWCS 286
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = -3
Query: 291 TARSWFTLRVS-SGLPSAAKILAGCPGANERGPL*LCAPSTGAAATKGVAIWEPHGAAKC 115
TA + TL +S + P+ I C GA L +C + GV+ +GA
Sbjct: 768 TATASCTLPISYTSTPTTTSISGTCNGATFDASLYVCDGTVLCPIVNGVSYQNCNGACYN 827
Query: 114 PAQPARPTGAM 82
P+Q GA+
Sbjct: 828 PSQYGCDNGAL 838
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 505 PNMSQMCSVSQTPMTNRSGQPKWSN 431
P SQ SVS+ P ++R+G P N
Sbjct: 159 PQSSQSSSVSRNPASSRAGSPTRDN 183
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 8.4
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = -1
Query: 521 FRTIFTKYESNVQRVPNPNDQQERPAQVEQ*VHGRPNVRQASRLGRRETTPLQEPEQQNV 342
++T T SNVQ + + ND Q+ P + QA T Q+ N+
Sbjct: 25 YQTNITNETSNVQNLSSGNDDQQYPNSTNDDANNGLTASQAKLQDIAAVTLFQD---NNI 81
Query: 341 SSKDAHHHVPELLP*NE-QHDRGLH*EYP 258
S+ P L NE RG +YP
Sbjct: 82 STTTLAPPSPSPLRLNEAPRRRGRPRKYP 110
>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 477
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 212 LMKEVLYNYVRQVLEQQQLKVLRYGSPMARLS 117
++ E LY+Y R+ + L L Y + + RLS
Sbjct: 139 ILPEALYDYNRETVSTCPLSFLSYSTGVERLS 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,528
Number of Sequences: 5004
Number of extensions: 55199
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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