Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0306
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0919 + 21564245-21565699,21566876-21567022,21567170-215672... 30 1.6
08_02_0844 + 21798076-21798618 30 1.6
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 30 1.6
08_02_1012 + 23550314-23551504 29 2.1
10_08_1038 - 22485394-22485960,22486712-22487197 29 2.8
06_03_0267 + 18970578-18972464 29 2.8
01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692 29 2.8
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 29 3.7
12_02_1030 - 25532635-25532997 28 4.9
11_03_0157 + 10897769-10898066,10898308-10899461 28 4.9
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764 28 4.9
05_04_0060 + 17576427-17578781 28 4.9
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 28 4.9
03_05_0758 + 27491778-27492088,27492996-27493113 28 6.5
02_01_0109 - 795066-796280 28 6.5
01_06_0442 + 29425199-29425274,29425389-29425429,29426097-294261... 28 6.5
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 27 8.6
10_08_0816 + 20789399-20789728,20790098-20790420,20791437-207915... 27 8.6
08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888... 27 8.6
08_01_0359 + 3152483-3152857,3154493-3154855,3155133-3155211,315... 27 8.6
05_04_0224 - 19198722-19198835,19198947-19199436,19200478-192006... 27 8.6
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 27 8.6
03_01_0379 + 2946605-2946684,2946798-2946944,2947420-2947488,294... 27 8.6
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 27 8.6
>10_08_0919 +
21564245-21565699,21566876-21567022,21567170-21567286,
21567580-21568176
Length = 771
Score = 29.9 bits (64), Expect = 1.6
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 2/149 (1%)
Frame = -3
Query: 471 PQ*PTGAASPSGAIGAWATKRAAGQSTRAT*DHATAGARTAER-FFKRCTPP-CSRAFAV 298
P T AA+ GAI A +T AAG++ + D+ A R FF P R F
Sbjct: 2 PPETTEAAALRGAILAASTAGAAGRAVSSVADYLRRHAGDHPRAFFADALPSLLFRVFVA 61
Query: 297 K*TARSWFTLRVSSGLPSAAKILAGCPGANERGPL*LCAPSTGAAATKGVAIWEPHGAAK 118
+ S+ L ++G P+ A++LA L APS A A + H +
Sbjct: 62 SPDSPSFIDL--AAGDPALAELLAS-----------LLAPSGPLLAAVSAA--DRHALLR 106
Query: 117 CPAQPARPTGAMTLGFATATAAKEHNTTS 31
P R + L ++ATAA +++S
Sbjct: 107 FVFPPERLPDWLRLALSSATAASSSSSSS 135
>08_02_0844 + 21798076-21798618
Length = 180
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2
Query: 56 AVAVAKPSVIAPVGLAGWAGHLAAPWGSHIATPLVAAAPVLG 181
AVA AK +V+APV G A H A W S + A +LG
Sbjct: 11 AVAAAKAAVVAPVAAGGAAAHSA--WHSPVPYLFGGLAAMLG 50
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 29.9 bits (64), Expect = 1.6
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +2
Query: 113 GHLAAPWGSHIATPLVAAAPVLGAHNYRGPLSLAPGQPANILAA----DGRPLDTLSVNH 280
G LAA GS + P AAA G G + LA QP I A G PL S
Sbjct: 6 GKLAAAPGSSLFFPAAAAASGAGGGGGAGEVQLAAPQPEKIAAVQKDESGWPLWLSSAAG 65
Query: 281 DRAVHFTAKALEHGGVHLLKKR 346
D + ++ + H L+KR
Sbjct: 66 DALAGWAPRSAD--AFHKLEKR 85
>08_02_1012 + 23550314-23551504
Length = 396
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/82 (29%), Positives = 30/82 (36%)
Frame = -3
Query: 321 PCSRAFAVK*TARSWFTLRVSSGLPSAAKILAGCPGANERGPL*LCAPSTGAAATKGVAI 142
P AFA ++ S + SS S K G GP L P+ G AA A+
Sbjct: 285 PGGPAFARPTSSSSSSSSSSSSSSSSPTKQAPAALGFYPMGPYSLPLPAQGDAAEGNAAV 344
Query: 141 WEPHGAAKCPAQPARPTGAMTL 76
G P+ P P A L
Sbjct: 345 GSGDGTVTAPSPPPPPPAAAPL 366
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +2
Query: 47 SFAAVAVAKPSVI---APVGLAGWAGHLAAPWGSHIATP-LVAAAP 172
S AA A P+++ AP+GLA HL AP ++ TP L AAAP
Sbjct: 99 SCAAAAPPSPNILRIHAPIGLARSPAHLLAPTPAN--TPHLTAAAP 142
>06_03_0267 + 18970578-18972464
Length = 628
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 514 QYLPNMSQMCSVSQTPMTNRSGQPKWSNRCMGDQTCGRP 398
Q L + +M Q+P+T+ SG + RC + C +P
Sbjct: 214 QDLAPLPKMIQTPQSPVTSTSGVVSFQQRCNSTKICSQP 252
>01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692
Length = 540
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = -3
Query: 138 EPHGAAKCPAQPARPTGAMTLGFATATAAKEHNTT 34
+ HG + CP QP++P +A + + ++ T
Sbjct: 413 QQHGLSSCPPQPSKPNHCSVASYAVQGSGQSYSAT 447
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -1
Query: 470 PNDQQERPAQVEQ*VHGRPNVR---QASRLGRRETTPLQEPEQQNVSSKDAHHHVP 312
P+ Q + QV Q RP QAS LG ++ LQ+P QQ+ A H P
Sbjct: 80 PSMQSNQGGQVSQSQQERPGQTVYPQASHLGHQQ---LQQPTQQSPFQPTAQHQAP 132
>12_02_1030 - 25532635-25532997
Length = 120
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 76 GLRNCYCSKGAQHHQLDHCGLC 11
GL + C GA HH+L GLC
Sbjct: 60 GLPSLTCGGGAAHHRLHRSGLC 81
>11_03_0157 + 10897769-10898066,10898308-10899461
Length = 483
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 89 PVGLAGWAGHLAAPWGSHIATPLVAAAPVLGA 184
P+ AG A HL PW AT L+ A VL A
Sbjct: 188 PLVFAGAASHLHLPWVRLTATQLLTVAAVLVA 219
>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
Length = 973
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 155 LVAAAPVLGAHNYRGPLSLAPGQPANILAADGRP 256
L+A +P +G H L APGQP ++ + G+P
Sbjct: 616 LIALSPQMG-HTIAEKLCKAPGQPGRLVKSIGQP 648
>05_04_0060 + 17576427-17578781
Length = 784
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = +2
Query: 98 LAGWAGHLAAPWGSHIATPL-------VAAAPVLGAHNYRGPLSLAPGQPANILAADG 250
+ G+A + +P SH AT + V APV+ A + RGP + +PG P + A G
Sbjct: 462 IMGYAA-VGSPAASHNATIVFNSTVVGVKPAPVVAAFSSRGPSAASPGVPKPDIMAPG 518
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Frame = -3
Query: 258 SGLPSAAKILAGCPGANERGPL*LCAPSTGAAATKGVAIWEPHGAAKCPAQPARPTGAMT 79
SG P+ A A P E G AP+ GVA + P P A
Sbjct: 60 SGSPATAAAAAPVPSRKESGSTSAAAPAAATRKASGVAAATTGVLPRKPPGTTAPVAARN 119
Query: 78 LGFATA---TAAKEHNTTS 31
+ TA TA + TT+
Sbjct: 120 IPATTAASRTATRATTTTT 138
>03_05_0758 + 27491778-27492088,27492996-27493113
Length = 142
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = -3
Query: 228 AGCPGANERGPL*LCAPSTGAAATKGVAIWEPHGAAKCPAQPARPTGAMTLGFATATAAK 49
A G GP+ L + +++ G A+ P G A T MT TAT A
Sbjct: 25 AAMAGGARTGPVHLAGGTASSSSAPGPAVATPRGDAAGATTMTATTTTMTAAATTATFAA 84
Query: 48 E 46
+
Sbjct: 85 D 85
>02_01_0109 - 795066-796280
Length = 404
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 447 SPSGAIGAWATKRAAG 400
+P+GA G+WAT RA G
Sbjct: 195 APAGAAGSWATARAGG 210
>01_06_0442 +
29425199-29425274,29425389-29425429,29426097-29426166,
29426251-29426399,29426654-29426749,29426850-29426920,
29427247-29427308,29427490-29427553,29427630-29427714,
29427793-29427919,29428092-29428174,29428271-29428331,
29428534-29428670,29428984-29429280
Length = 472
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +2
Query: 89 PVGLAGWAGHLAAPWGSHIATPLVAAAPVLGAHNYRGPLSLAPGQPANILAADGRPLDTL 268
P+ G AP G+ + + PV+ A N+ G S + +PA + D P+DT
Sbjct: 349 PIASVGTLAKQKAPVGNDAS---FSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTS 405
Query: 269 SVNHDRA 289
+ RA
Sbjct: 406 EPSRTRA 412
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +3
Query: 300 RQKLWNMVVCIF*RNVLLFWLLQWRGLTSPESTGLPHVWSPM 425
R+KLW +N WL W+ G+ H+W P+
Sbjct: 696 RRKLWGEAGEAVDQNTQPQWLANWQMEILNADNGVMHIWIPL 737
>10_08_0816 +
20789399-20789728,20790098-20790420,20791437-20791584,
20791679-20791711,20791879-20791950
Length = 301
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +2
Query: 374 WSH-VARVDWPAARL--VAHAPIAPLGLAAPVGHW 469
W H + +W ++ V H AP+G AAP HW
Sbjct: 143 WIHRLLHGEWGYEKIHRVHHEFTAPIGFAAPYAHW 177
>08_02_1620 -
28288152-28288353,28288469-28288557,28288634-28288828,
28289082-28289423,28290227-28291672,28292590-28292666,
28293160-28294509,28295921-28296029,28296896-28297007,
28297800-28297957
Length = 1359
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 461 QQERPAQVEQ*VHGRPNVRQASRLGRRETTPLQEPEQQ 348
QQ++ Q +Q + PNV R+ +T +Q+P+QQ
Sbjct: 453 QQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQ 490
>08_01_0359 +
3152483-3152857,3154493-3154855,3155133-3155211,
3155473-3155879,3156342-3156497,3156728-3156895,
3156991-3157131,3157739-3157966,3158063-3158176,
3158293-3158448
Length = 728
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 49 GAQHHQLDHCGLCC 8
G HH L+H GLCC
Sbjct: 9 GGVHHHLNHHGLCC 22
>05_04_0224 -
19198722-19198835,19198947-19199436,19200478-19200641,
19202534-19202632,19204069-19204175,19204278-19204401,
19205113-19205242,19205314-19205433,19205861-19206002,
19207243-19207326,19207651-19207742,19207855-19207944,
19208057-19208136,19208312-19208451,19208587-19209067
Length = 818
Score = 27.5 bits (58), Expect = 8.6
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Frame = +2
Query: 230 NILAADGRPLDTLSVNHDRAVHFTAKALEHGGVHLL--KKRSAVLAPAVAWSHVARVDWP 403
++L A R L S A L H G HLL R +P H AR P
Sbjct: 6 SLLLAPSRALSLSSPPLRLAPTHPPLRLHHDGGHLLVGTTRRQAPSPRRRRLHAARASAP 65
Query: 404 AARLVAHAPIAPLGLAAPVG 463
+A A +P+ P G VG
Sbjct: 66 SA--AAASPVGPAGEGGEVG 83
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -3
Query: 270 LRVSSGLPSAAKILAGCPGANERGPL*LCAPSTGAAATKGVAIWEPHGAAKCP 112
L + + S I G P NERG + + +A T VAI A CP
Sbjct: 168 LGIKDSVQSTNSIQHGAPITNERGKTAVDRSTVNSARTATVAIPVASNAMSCP 220
>03_01_0379 +
2946605-2946684,2946798-2946944,2947420-2947488,
2947608-2947773,2947889-2948117,2948206-2948645,
2949155-2949702,2949739-2949760
Length = 566
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -3
Query: 270 LRVSSGLPSAAKILAGCPGANERGPL*LCAPS---TGAAATKGVA 145
L +S G AK+L GC G N L P +G +AT+G+A
Sbjct: 143 LHLSDGSTIRAKVLIGCDGVNSVVAKWLGLPKPILSGRSATRGLA 187
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 56 AVAVAKPSVIAPVGLAGWA-GHLAAPWGSHIATPLVAAAPVLGAHNY 193
A AV P P G G G A+PW P+ A V+GA ++
Sbjct: 10 AAAVVAPEGADPAGGGGGGPGAPASPWRKTTPPPVAGEAVVMGAKSW 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,274,913
Number of Sequences: 37544
Number of extensions: 463882
Number of successful extensions: 1653
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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