Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0306
(596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31) 31 0.71
SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_41413| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 29 2.9
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_31326| Best HMM Match : rve (HMM E-Value=6.1e-07) 28 5.0
SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_56826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 28 6.6
SB_7410| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-22) 27 8.7
SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -3
Query: 486 AACPKPQ*PTGAASPSGAIGAWATKRAAGQSTRAT*DHATAGARTAERFFKRCT 325
A+ P P P AA+PS A +W + A ++ +T + GA+ ++ KR T
Sbjct: 126 ASSPAPSQPA-AATPSDAAASWLSSAKAEAASESTGSSGSQGAKMSDEELKRRT 178
>SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31)
Length = 396
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +2
Query: 275 NHDRAVHFTAKALEHGGVHLLKKRSAVLAPAVAWSHVARVDWPAARLVAHAP 430
+H VHF + AL G H++ S VL P + HV DW L+A AP
Sbjct: 336 SHALRVHFRSGALPPGR-HVV---SRVLHPRMPTGHVMSTDWLCLVLIAFAP 383
>SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 494 SNVQRVPNPNDQQERPAQVEQ*VHGRPNVRQ 402
S QR P P+ QQ P +Q H RP+ +Q
Sbjct: 175 SQQQRYPRPSQQQRHPRPSQQQRHPRPSQQQ 205
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 494 SNVQRVPNPNDQQERPAQVEQ*VHGRPNVRQA-SRLGRRETTPLQEPEQQN 345
S QR P P+ QQ P +Q H RP+ +Q R +++ P +Q++
Sbjct: 166 SQQQRYPRPSQQQRYPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPTEQQRH 216
>SB_41413| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 471
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 488 VQRVPNPNDQQERPAQVEQ*VHGRPNVRQASRLGRRETTP 369
VQ P P+D Q++P+QV P+ QA RRE P
Sbjct: 426 VQHAPQPDDAQQQPSQVAM----PPDSSQAITRPRREVKP 461
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 250 QTAGYSQCKPRSCCSFYGKSSGTW 321
++ GY + K SCCS YG SG +
Sbjct: 546 KSLGYYEAKEVSCCSRYGTGSGNF 569
>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -1
Query: 482 RVPNPNDQQERPAQVEQ*VHGRPNVRQA-SRLGRRETTPLQEPEQQNVSSKDAHHHVPE 309
R P P+ QQ P +Q H RP+ +Q R +++ P P QQ + PE
Sbjct: 201 RHPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQP--RPSQQQRYPRHNQQQTPE 257
>SB_31326| Best HMM Match : rve (HMM E-Value=6.1e-07)
Length = 330
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 206 KEVLYNYVRQVLEQQQLKVLRYGSPMARLSVQPSRLDP 93
K + YN V+ + ++L +L Y +S P RL P
Sbjct: 79 KNICYNNVKSIFSTRRLPILGYVVEEGNISPDPERLRP 116
>SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 206 KEVLYNYVRQVLEQQQLKVLRYGSPMARLSVQPSRLDP 93
K + YN V+ + ++L +L Y +S P RL P
Sbjct: 731 KNICYNNVKSIFSTRRLPILGYVVEEGNISPDPERLRP 768
>SB_56826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 419 RPNVRQASRLGRRETTPLQEPEQQNVSSKDAHHHVPELLP 300
RP+ + G+ +T P+++ QN+ + +H E LP
Sbjct: 177 RPSTSAETTEGKADTEPIKQSAPQNIPAASSHDKSEEELP 216
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -1
Query: 488 VQRVPNPNDQQERPAQVEQ*VHGRPNVRQASRLGRRETTPLQE-PEQQNVSSKDAHHHVP 312
+QRVP P +R HG P+ R + R +PL E P++ + A P
Sbjct: 638 IQRVPLPETHHQRVPYSRATHHGEPSPRIPTVTPRVPISPLAESPQKSPLEPVTATQMTP 697
Query: 311 ELLP 300
+ P
Sbjct: 698 PVAP 701
>SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = -1
Query: 482 RVPNPNDQQERPAQVEQ*VHGRPNVRQASRLGRRETTPLQEPEQQNVSSKDAHHHVPELL 303
R+ QQ R Q +Q + +Q RL +++ P + +QQ K P L
Sbjct: 84 RLKQQQQQQPRLKQQQQQPRLKQQQQQQPRLKQQQQQPRLQQQQQQPRLKQQQQQQPRLK 143
Query: 302 P*NEQHD 282
+ HD
Sbjct: 144 QQQQHHD 150
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 413 NVRQASRLGRRETTPLQEPEQQNVSSKDAHHHVPEL 306
NVR AS L R P+Q N++ + H P L
Sbjct: 1634 NVRSASLLELRRIREAMSPDQGNLTKRTGHESSPNL 1669
>SB_7410| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-22)
Length = 341
Score = 27.5 bits (58), Expect = 8.7
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Frame = -3
Query: 450 ASPSGAIGAWATKRAAGQ------STRAT*DHATAGARTAERFFKRCTP-PCSRAFAVK* 292
A+PS AIG W AA Q A T RF++ P RAF+V+
Sbjct: 80 AAPSLAIGKWPFSYAACQYMGYSGIAIAVGSMQTISCIAVNRFYRVVRPNKFKRAFSVRS 139
Query: 291 TARSWFTLRVSSGLPSAAKILAGCPGANERGPL*LCAPSTGAAATKGV 148
TA TL V + + IL + G + LC PS+ + KG+
Sbjct: 140 TAVYIVTLWVFALIAPLPYILEDEKFKFQPGKI-LCFPSSESGLQKGL 186
>SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 27.5 bits (58), Expect = 8.7
Identities = 33/134 (24%), Positives = 39/134 (29%), Gaps = 2/134 (1%)
Frame = -3
Query: 450 ASPSGAIGAWATKRAAGQSTRAT*DHATA--GARTAERFFKRCTPPCSRAFAVK*TARSW 277
A+P G A A T A TA G TA P + A TA
Sbjct: 720 AAPGGTTAAQGGTTVAPGGTTAAPGGTTAAPGGTTAAPGGTTAAPGGTTAAPGGTTAAPG 779
Query: 276 FTLRVSSGLPSAAKILAGCPGANERGPL*LCAPSTGAAATKGVAIWEPHGAAKCPAQPAR 97
T G +A PG P A G A G P G PA
Sbjct: 780 GTTTAPGGTTAAPGGTTAAPGGTTAAPGGTTAAPGGTTAAPGGTTTAPEGTTAAPAATTE 839
Query: 96 PTGAMTLGFATATA 55
A G T+++
Sbjct: 840 SPTASPSGNGTSSS 853
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,981,283
Number of Sequences: 59808
Number of extensions: 477228
Number of successful extensions: 1414
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -