Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0306
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.0  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   6.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   6.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 518 RTIFTKYESNVQRVPNPNDQQERPAQVEQ 432
           + +F  +   + R+  P+D++ER AQ  Q
Sbjct: 333 KVVFLYWLPCILRMSRPSDKEEREAQKSQ 361



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 73  LRNCYCSKGAQHHQLDH 23
           L N Y + G  HH + H
Sbjct: 405 LNNVYSTPGPHHHTMGH 421


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 496 SQMCSVSQTPMTNRSGQPKWSNRCMGDQTCGR 401
           S  CS SQ+  ++ S   + SNR      CGR
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSESSGYCGR 49


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 59   VAVAKPSVIAPVGLAGWAGHLAAPW 133
            VA   P+   P  +  + GH+  PW
Sbjct: 1303 VAAQVPTNRVPARITSFGGHVVRPW 1327


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 59   VAVAKPSVIAPVGLAGWAGHLAAPW 133
            VA   P+   P  +  + GH+  PW
Sbjct: 1299 VAAQVPTNRVPARITSFGGHVVRPW 1323


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 496 SQMCSVSQTPMTNRSGQPKWSNRCMGDQTCGR 401
           S  CS SQ+  ++ S   + SNR      CGR
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSESSGYCGR 49


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -2

Query: 73  LRNCY-CSKGAQHHQLDHCGLCCF 5
           L +CY C  GA   + DH  LC +
Sbjct: 320 LGDCYYCISGAPIERPDHAVLCVY 343


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -1

Query: 461  QQERPAQVEQ*VHGRPNVRQASRLGRRETTPLQEPEQQ 348
            QQ++P Q +Q    +   +Q+ +  +++  P Q+ +QQ
Sbjct: 1501 QQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQ 1538


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +3

Query: 216 QGNQLISWQPMADRWI 263
           Q N+ ++WQP+A +++
Sbjct: 102 QWNEDLNWQPIATKYL 117


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +3

Query: 216 QGNQLISWQPMADRWI 263
           Q N+ ++WQP+A +++
Sbjct: 117 QWNEDLNWQPIATKYL 132


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 338 SKDAHHHVPELLP*NEQHDRGLH 270
           S+  H H  +++  ++Q   GLH
Sbjct: 792 SQQRHQHAAQMIYGHQQSHHGLH 814


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,804
Number of Sequences: 438
Number of extensions: 4256
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)