Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0306
(596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30950.1 68417.m04394 omega-6 fatty acid desaturase, chloropl... 38 0.004
At5g27970.1 68418.m03369 expressed protein 30 1.0
At1g16560.3 68414.m01985 Per1-like family protein contains Pfam ... 29 3.1
At1g16560.2 68414.m01984 Per1-like family protein contains Pfam ... 29 3.1
At1g16560.1 68414.m01983 Per1-like family protein contains Pfam ... 29 3.1
At1g13820.1 68414.m01622 hydrolase, alpha/beta fold family prote... 28 4.1
At5g17980.1 68418.m02109 C2 domain-containing protein contains I... 28 5.4
At5g05490.2 68418.m00593 cohesion family protein SYN1, splice va... 27 9.5
At5g05490.1 68418.m00592 cohesion family protein SYN1, splice va... 27 9.5
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 27 9.5
>At4g30950.1 68417.m04394 omega-6 fatty acid desaturase, chloroplast
(FAD6) (FADC) identical to GI:493068
Length = 448
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 5 KATQTTMIKLVVLCSFAAVAVAKPSVIAPVGLAGWAGHLAAPW-GSH 142
+A++ +K+ + C FA +AV P ++ VG+ GW PW G H
Sbjct: 268 RASEVNRVKISLACVFAFMAVGWPLIVYKVGILGWVKFWLMPWLGYH 314
>At5g27970.1 68418.m03369 expressed protein
Length = 1629
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -2
Query: 433 NRCMGDQTCGRPVDSGDVRPRHCRSQNSRTFLQKM 329
+RC +TC PV++ ++ P HC S+ S T LQK+
Sbjct: 1457 DRC-ASRTCSLPVETVELMPAHC-SRFSLTCLQKL 1489
>At1g16560.3 68414.m01985 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 261 ILSV*TTIVLFILRQKL---WNMVVCIF*RNVLLFWLLQWRGLTSPES 395
IL+ TT +L+I KL WNM+VC+ LF +W ++S S
Sbjct: 225 ILAFVTTHILYINFYKLDYGWNMIVCVAMGVSQLFLWARWAAVSSHPS 272
>At1g16560.2 68414.m01984 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 261 ILSV*TTIVLFILRQKL---WNMVVCIF*RNVLLFWLLQWRGLTSPES 395
IL+ TT +L+I KL WNM+VC+ LF +W ++S S
Sbjct: 225 ILAFVTTHILYINFYKLDYGWNMIVCVAMGVSQLFLWARWAAVSSHPS 272
>At1g16560.1 68414.m01983 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 261 ILSV*TTIVLFILRQKL---WNMVVCIF*RNVLLFWLLQWRGLTSPES 395
IL+ TT +L+I KL WNM+VC+ LF +W ++S S
Sbjct: 225 ILAFVTTHILYINFYKLDYGWNMIVCVAMGVSQLFLWARWAAVSSHPS 272
>At1g13820.1 68414.m01622 hydrolase, alpha/beta fold family protein
contains Pfam profile PF00561: hydrolase, alpha/beta
fold family
Length = 339
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = +2
Query: 83 IAPVGLAGWAGHLAAPWGSHIATPLVAAAPVLGAHNYRGPLSLAPGQPANILAADGRPLD 262
+ P +A H W SHI P+V P LGA + +A P A + L
Sbjct: 128 LPPCDVASKREHFYKFWKSHIKRPVVLVGPSLGA---AVAIDIAVNHPE---AVESLVLM 181
Query: 263 TLSVNHDRAVHFTA--KALEHGGVHLLK 340
SV + + KA + GV+LLK
Sbjct: 182 DASVYAEGTGNLATLPKAAAYAGVYLLK 209
>At5g17980.1 68418.m02109 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1049
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/56 (26%), Positives = 22/56 (39%)
Frame = -1
Query: 497 ESNVQRVPNPNDQQERPAQVEQ*VHGRPNVRQASRLGRRETTPLQEPEQQNVSSKD 330
ES+ P P+++ P Q V G S E P++EP Q +D
Sbjct: 194 ESSPAEGPKPDEEASPPLQENATVGGEEPPASESDKNEAEAKPVEEPPQNQPDGED 249
>At5g05490.2 68418.m00593 cohesion family protein SYN1, splice
variant 1 (SYN1) identical to SYN1 splice variant 1
[Arabidopsis thaliana] GI:6453715
Length = 617
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/87 (22%), Positives = 35/87 (40%)
Frame = -1
Query: 539 SKDYFRFRTIFTKYESNVQRVPNPNDQQERPAQVEQ*VHGRPNVRQASRLGRRETTPLQE 360
++ Y RF + + Q NP + E P + + P G T+P ++
Sbjct: 188 NETYDRFERFDIEGDDETQMNSNPREGAEIPTTL---IPSPPRHHDIPE-GVNPTSPQRQ 243
Query: 359 PEQQNVSSKDAHHHVPELLP*NEQHDR 279
+Q+N A + +P E+HDR
Sbjct: 244 EQQENRRDGFAEQMEEQNIPDKEEHDR 270
>At5g05490.1 68418.m00592 cohesion family protein SYN1, splice
variant 1 (SYN1) identical to SYN1 splice variant 1
[Arabidopsis thaliana] GI:6453715
Length = 627
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/87 (22%), Positives = 35/87 (40%)
Frame = -1
Query: 539 SKDYFRFRTIFTKYESNVQRVPNPNDQQERPAQVEQ*VHGRPNVRQASRLGRRETTPLQE 360
++ Y RF + + Q NP + E P + + P G T+P ++
Sbjct: 198 NETYDRFERFDIEGDDETQMNSNPREGAEIPTTL---IPSPPRHHDIPE-GVNPTSPQRQ 253
Query: 359 PEQQNVSSKDAHHHVPELLP*NEQHDR 279
+Q+N A + +P E+HDR
Sbjct: 254 EQQENRRDGFAEQMEEQNIPDKEEHDR 280
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -1
Query: 470 PNDQQERPAQVEQ*VHGRPNVRQASR----LGRRETTPLQEPEQQNVSSKDAHHHVPEL 306
PN QQ++ Q+ Q + ++Q + L +++ LQ+ +QQ+ + H + +L
Sbjct: 679 PNQQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQLSQL 737
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,377,011
Number of Sequences: 28952
Number of extensions: 314575
Number of successful extensions: 996
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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