Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0305
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.3  
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo...    28   1.3  
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr...    27   2.3  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    27   4.0  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   7.0  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    26   7.0  

>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 743 ILKYLYIVAGCSEPPHPQIYTGMSGTNV 660
           IL YL+ ++  ++PPH  ++    GTNV
Sbjct: 173 ILSYLWELSNTNDPPHVIVWHTAKGTNV 200


>SPAC1399.04c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 220

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 282 RLSKDHMNQLGCELHPLMKTTKSH*KGLSTLLKVGIPRGKIV 407
           +L KD  ++L   L PL+ T  S    + TL+  GIP   IV
Sbjct: 126 KLPKDAQDRLVLLLDPLLATGNSVILAIQTLINKGIPEENIV 167


>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 112

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 650 NIRTHLSQTSQCISEGVEALNTQQLYINILRFPQNA-QEWQKLKE 781
           ++RTHL      + E +EAL  +Q Y        NA Q  QK+KE
Sbjct: 67  SVRTHLDAEMASLREDIEALQKKQTYHETT--ASNAEQHLQKIKE 109


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 446 KVCPFVYIQLSHYCKTISLN*STKNILKEYKLDSLIT 556
           K+   +Y+  +H C  I+L   T  +L E  LD  +T
Sbjct: 332 KIGSSIYVAAAHGCWGITLGPGTGKVLSELILDGAVT 368


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 709 QSLHTLRYTLGCLGQMCSYI 650
           Q +HT+ + LGC+    SY+
Sbjct: 693 QVIHTIEFCLGCVSHTASYL 712


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -3

Query: 429 VPILYIKTQSYHVEYLPLEELKVLFNGF*WSSSKGVIHTLTGSYDPSTIYTLSLYFYMVV 250
           V  +Y +T     EY P   ++V F+ F WS   G   TL  SY  ST++ L    + +V
Sbjct: 214 VVYIYHRTGLLFHEYRPNRLIEVGFSDFEWSPF-GKYLTLC-SYHDSTLHLLETKTFSIV 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,361
Number of Sequences: 5004
Number of extensions: 68601
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)