Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0305
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)                  29   4.2  
SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1)                  29   5.6  
SB_42460| Best HMM Match : Peptidase_C16 (HMM E-Value=4.7)             28   9.8  

>SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)
          Length = 1128

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 709 QSLHTLRYTLGCLGQMCSYI 650
           Q++HT+ Y LGC+    SY+
Sbjct: 737 QAIHTIEYCLGCISNTASYL 756


>SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1)
          Length = 977

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 531 SFKIFLVD*FSDIVLQ*WESWI*TNGQTLIICYKVPILYIKT-QSY 397
           S K+F+ D +  I ++  +S++  N   L +C +   +Y++T QSY
Sbjct: 722 STKLFMCDQYKAIYVRTVQSYLCANSTKLFMCEQYKAIYVRTVQSY 767


>SB_42460| Best HMM Match : Peptidase_C16 (HMM E-Value=4.7)
          Length = 786

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 477 ESWI*TNGQTLIICYKVPILYIKTQSYHV 391
           ES+  T GQT I CY VP  Y   +SY +
Sbjct: 417 ESYTFTYGQTDICCYSVPNDYPDIRSYTI 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,532,539
Number of Sequences: 59808
Number of extensions: 454496
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)