Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0305
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 352 WLLVVFIKGCNSHPN 308
           W+++V I GC+ +P+
Sbjct: 10  WIVLVLISGCSGNPD 24


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 463 LYPTLPLL*NNITKLIY 513
           ++P LPLL N +  LIY
Sbjct: 543 IHPWLPLLRNRLDTLIY 559


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +1

Query: 619 N*SYQKNHKRKYKNTF--VPDIPV 684
           N +Y  N+K+ YKN    +  IPV
Sbjct: 106 NNNYNNNYKKLYKNYIINIEQIPV 129


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +1

Query: 619 N*SYQKNHKRKYKNTF--VPDIPV 684
           N +Y  N+K+ YKN    +  IPV
Sbjct: 106 NNNYNNNYKKLYKNYIINIEQIPV 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,382
Number of Sequences: 438
Number of extensions: 5011
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)