Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0305
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14905.2 68417.m02290 kelch repeat-containing F-box family pr...    28   6.1  
At4g14905.1 68417.m02289 kelch repeat-containing F-box family pr...    28   6.1  

>At4g14905.2 68417.m02290 kelch repeat-containing F-box family
           protein contains Pfam PF01344: Kelch motif (2 copies)
           and PF00646: F-box domain; similar to putative SKP1
           interacting partner 6 (GP:21689879) (SKIP6) {Arabidopsis
           thaliana}|19798784|gb|AU230074.1|AU230074
          Length = 372

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 451 LPICLYPTLPLL*NNITKLIY--QKYLERIQIRFSNNYVY 564
           +P C YP + L+  N  +L+   + Y+ER  IR + N +Y
Sbjct: 46  VPRCYYPAISLVCRNFRRLMASPEIYIERSVIRRTENILY 85


>At4g14905.1 68417.m02289 kelch repeat-containing F-box family
           protein contains Pfam PF01344: Kelch motif (2 copies)
           and PF00646: F-box domain; similar to putative SKP1
           interacting partner 6 (GP:21689879) (SKIP6) {Arabidopsis
           thaliana}|19798784|gb|AU230074.1|AU230074
          Length = 372

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 451 LPICLYPTLPLL*NNITKLIY--QKYLERIQIRFSNNYVY 564
           +P C YP + L+  N  +L+   + Y+ER  IR + N +Y
Sbjct: 46  VPRCYYPAISLVCRNFRRLMASPEIYIERSVIRRTENILY 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,936,893
Number of Sequences: 28952
Number of extensions: 325809
Number of successful extensions: 576
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)