Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0304
         (800 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0DRX1 Cluster: Chromosome undetermined scaffold_61, wh...    38   0.29 
UniRef50_Q7RE07 Cluster: CCAAT-box DNA binding protein subunit B...    36   0.90 
UniRef50_Q64TK3 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_Q0W143 Cluster: Putative uncharacterized protein; n=1; ...    34   3.6  
UniRef50_Q7RN97 Cluster: Putative uncharacterized protein PY0192...    33   6.3  
UniRef50_Q583G3 Cluster: Putative uncharacterized protein; n=1; ...    33   6.3  
UniRef50_Q7RPZ8 Cluster: Putative uncharacterized protein PY0130...    33   8.4  
UniRef50_Q7RG76 Cluster: Peptide chain release factor 1; n=6; ce...    33   8.4  

>UniRef50_A0DRX1 Cluster: Chromosome undetermined scaffold_61, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_61,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 982

 Score = 37.9 bits (84), Expect = 0.29
 Identities = 17/65 (26%), Positives = 36/65 (55%)
 Frame = +3

Query: 333 MLHHNQVNH*FIDNIIHLYLSFYRFDNANTDDNLNRNFFKSLENVCTSFVFNNVLISSYF 512
           +L ++Q+   ++  II LYL  Y+     +++ + +  FK++   C   + +N L+ S F
Sbjct: 489 ILKNDQIGVQYLMEIIKLYLDVYQQQPQASNNFIMKTVFKTISQGCAQLISSNELLPSLF 548

Query: 513 SFIIV 527
           +FI +
Sbjct: 549 NFITI 553


>UniRef50_Q7RE07 Cluster: CCAAT-box DNA binding protein subunit B;
           n=5; Plasmodium (Vinckeia)|Rep: CCAAT-box DNA binding
           protein subunit B - Plasmodium yoelii yoelii
          Length = 850

 Score = 36.3 bits (80), Expect = 0.90
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = +3

Query: 441 NFFKSLENVCTSFVFNNVLISSYFSF-IIVLYTD*IKLPNSNAHFSKNSKQVRN 599
           N F+ L  VCT++V NN+LI   F+F +I+L+T+ I + NS     +N+ + RN
Sbjct: 5   NNFEKL--VCTNYVCNNILILHIFNFLLIILFTENISI-NSRNKNGQNNYEHRN 55


>UniRef50_Q64TK3 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides fragilis|Rep: Putative uncharacterized
           protein - Bacteroides fragilis
          Length = 89

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 24/72 (33%), Positives = 35/72 (48%)
 Frame = +3

Query: 312 GMFRIKKMLHHNQVNH*FIDNIIHLYLSFYRFDNANTDDNLNRNFFKSLENVCTSFVFNN 491
           G+F +KK+LH    NH FI N+   +  F  FDN     +++  FF+S    C  F    
Sbjct: 28  GLF-LKKVLHFFVRNHLFIKNVSSSFRRFNHFDNL----SISTTFFRSFVQTCYCF---- 78

Query: 492 VLISSYFSFIIV 527
            L    +SF I+
Sbjct: 79  -LCHGLYSFFII 89


>UniRef50_Q0W143 Cluster: Putative uncharacterized protein; n=1;
           uncultured methanogenic archaeon RC-I|Rep: Putative
           uncharacterized protein - Uncultured methanogenic
           archaeon RC-I
          Length = 455

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +3

Query: 318 FRIKKMLHHNQVNH*FIDNIIHLYLSFYRFDNANTDDNLNRNFFKSLENVCTSFVFNNVL 497
           F I    +H ++ H F   I  L  + Y+  N   D  +N N+   ++N C  ++FN + 
Sbjct: 197 FPIVVSKNHFELYHYFESYIADLNQTEYQNYNEFVDFLVNNNYLTDIQNKCFEYIFNFLD 256

Query: 498 ISSYFSFII 524
           +S  FS +I
Sbjct: 257 LSEDFSPVI 265


>UniRef50_Q7RN97 Cluster: Putative uncharacterized protein PY01923;
            n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein PY01923 - Plasmodium yoelii yoelii
          Length = 2112

 Score = 33.5 bits (73), Expect = 6.3
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +3

Query: 339  HHNQVNH*FIDNIIHLYLSFYRFDNANTDDNLNRNFFKSLENVCTSFVFNNVLIS 503
            H+N ++  +I NI ++Y +     N N  +  N N F S +N  T+   NN+LI+
Sbjct: 1118 HNNYLSDGYIKNIRNIYNNSMSNGNKNGSNYFNGNLFVSEKNRLTNSYTNNMLIN 1172


>UniRef50_Q583G3 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 181

 Score = 33.5 bits (73), Expect = 6.3
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 109 KYLFIYLYENERMECLFVYQ--KRVDSIKRNNYLINVICIWIVFNFVAKKE 255
           KY+++Y+Y + R    F+YQ  +  +  K+ N  +  +C+ + F+F  KK+
Sbjct: 104 KYIYLYMYVS-RHAYTFIYQTHEMKEKEKKGNRSVEFVCLLVSFSFFKKKK 153


>UniRef50_Q7RPZ8 Cluster: Putative uncharacterized protein PY01306;
           n=4; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY01306 - Plasmodium yoelii yoelii
          Length = 1593

 Score = 33.1 bits (72), Expect = 8.4
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = +3

Query: 366 IDNIIHL-YLSF---YRFDNANTDDNLNRNFFKSLENVCTSFVFNNVLISSYFSFIIVLY 533
           I+N+ +L Y S+   Y  +NAN D+N N N + S  N      F N +  +Y   I ++Y
Sbjct: 346 INNLKNLKYFSYSIVYTDENANNDNNTN-NSYSSSNNDDAKTNFQNNVNRNYGKKIRIVY 404

Query: 534 TD*IKLPNSNAHFSKNS 584
           T  +    SN   +KNS
Sbjct: 405 TSPVHPIYSNVIVNKNS 421


>UniRef50_Q7RG76 Cluster: Peptide chain release factor 1; n=6;
            cellular organisms|Rep: Peptide chain release factor 1 -
            Plasmodium yoelii yoelii
          Length = 2075

 Score = 33.1 bits (72), Expect = 8.4
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = +3

Query: 321  RIKKMLHHNQVNH*FIDNIIHLYLSFYRF-DNANTDDNLNRNFFKSLENVCTSFVFNNVL 497
            ++KK+L+   +N  + ++I+ +  S  +  DN N ++    N   +++ +   +   N  
Sbjct: 1568 KLKKLLYSLDIN--YNEHILKIMYSLIQNRDNRNINNLSKDNLLYTMKKINKMYELKNHK 1625

Query: 498  ISSYFSFIIVLYTD*IKLPNSNAHFSKNSKQV 593
              SY ++II   T+ I L N   HF+KNS  +
Sbjct: 1626 NKSYINYII---TNIIFLNNIFHHFNKNSNYI 1654


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,737,811
Number of Sequences: 1657284
Number of extensions: 11896987
Number of successful extensions: 27925
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27884
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68731504465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)