Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0304
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    27   3.1  
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    27   3.1  

>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 399 YRFDNANTDDNLNRNFFKSLENVCTSF 479
           Y+F+N N    L   FFK +E   +SF
Sbjct: 150 YQFNNCNPSPKLEEEFFKMIEPGLSSF 176


>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 115 LFIYLYENERMECLFVYQKRVDSIKRNNYLINV 213
           L IYL   +R+  +F+ +   D  K++ YLINV
Sbjct: 12  LEIYLENKKRLHSIFLKEDTEDVEKKSLYLINV 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,454
Number of Sequences: 5004
Number of extensions: 57374
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)