Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0304
(800 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.4
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 24 1.9
D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein. 23 3.3
AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly pro... 23 3.3
AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly pro... 23 3.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.8
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 22 5.8
S78459-1|AAB34403.1| 50|Apis mellifera mast cell-degranulating... 22 7.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.6
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 649 ITPNLTVFTNINSYTSCTRPLRWTFKINIIISHS 750
ITPN +I Y S T++ N++++H+
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHN 164
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 649 ITPNLTVFTNINSYTSCTRPLRWTFKINIIISHS 750
ITPN +I Y S T++ N++++H+
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHN 164
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 23.8 bits (49), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 634 PKSHSYHWSEIQFLTCLLFFEKCALEFGNFI*SVY 530
PK SEI FL C +F +EF F+ ++Y
Sbjct: 286 PKVSYIKASEIWFLGCTIFLFAAMVEFA-FVNTIY 319
>D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein.
Length = 432
Score = 23.0 bits (47), Expect = 3.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 657 RSYILKTTPNLIRITGPKFNF*LVCYFLRNARWNSAIL 544
R YIL + + ++ FNF V + + NA N IL
Sbjct: 375 REYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELIL 412
>AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 23.0 bits (47), Expect = 3.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 657 RSYILKTTPNLIRITGPKFNF*LVCYFLRNARWNSAIL 544
R YIL + + ++ FNF V + + NA N IL
Sbjct: 375 REYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELIL 412
>AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 23.0 bits (47), Expect = 3.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 657 RSYILKTTPNLIRITGPKFNF*LVCYFLRNARWNSAIL 544
R YIL + + ++ FNF V + + NA N IL
Sbjct: 375 REYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELIL 412
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.8
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 649 ITPNLTVFTNINSYTSCTRPLRWTFKINIIISHS 750
ITPN +I Y S T++ +++++H+
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHN 96
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 22.2 bits (45), Expect = 5.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 613 SDTNEIWGSF*YITPNLTVFTNI 681
+D N W I P LT+F N+
Sbjct: 183 TDANSWWALILVIVPCLTLFGNV 205
>S78459-1|AAB34403.1| 50|Apis mellifera mast cell-degranulating
peptide protein.
Length = 50
Score = 21.8 bits (44), Expect = 7.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 468 CTSFVFNNVLISSYF 512
CT F + +LI+SYF
Sbjct: 7 CTFFFLSVILITSYF 21
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.6
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 649 ITPNLTVFTNINSYTSCTRPLRWTFKINIIISH 747
ITPN +I Y S T++ +++++H
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTH 95
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.6
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 649 ITPNLTVFTNINSYTSCTRPLRWTFKINIIISH 747
ITPN +I Y S T++ +++++H
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTH 95
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.6
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 649 ITPNLTVFTNINSYTSCTRPLRWTFKINIIISH 747
ITPN +I Y S T++ +++++H
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTH 95
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.6
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 649 ITPNLTVFTNINSYTSCTRPLRWTFKINIIISH 747
ITPN +I Y S T++ +++++H
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTH 95
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.6
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 649 ITPNLTVFTNINSYTSCTRPLRWTFKINIIISH 747
ITPN +I Y S T++ +++++H
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTH 95
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,418
Number of Sequences: 438
Number of extensions: 4036
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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