Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0303
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 507 NHLSCTCSQVAKKFIKYLRHTLAADLFAS 593
           NHL+ TCS       K LR  LA +  AS
Sbjct: 343 NHLNSTCSVTNSPHQKKLRFHLAKERKAS 371


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 259 FSCRRIDYFTN 227
           + C RIDYF N
Sbjct: 116 YECSRIDYFPN 126


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 557 IFYELFRYL 531
           +FYE+FRYL
Sbjct: 48  VFYEVFRYL 56


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 687 HRSFFHGRSLYHSDPTPPNGNVCTP 613
           H +  HG S  H+ P   + +  TP
Sbjct: 416 HHTMGHGHSHIHATPHHHHSHAATP 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,521
Number of Sequences: 438
Number of extensions: 4588
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)