Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0299
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    27   2.2  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    27   3.8  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.8  

>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 421 SIVAFLRNEVRDEISLDRSCNGVNSISS 338
           S  +F+ ++V DEIS+D  C  V  ISS
Sbjct: 88  SFKSFVLSDVMDEISIDTKCKIVLQISS 115


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = +3

Query: 180 KWDENIELEYTSAFFTGVYGMWNIYIFALLVLYAPSHKQWPAVEDTSDTQNLSEEIEFTP 359
           K ++NIE E      +GVYG   + +   +     + ++    E   + +    E+EF  
Sbjct: 156 KLEKNIEKELVKRLKSGVYGDQPLNVNEEIWNKVLAAREGLIDEGEEEEEREEAELEFVS 215

Query: 360 LQERSSEISSLTSFL 404
             E   EIS L  +L
Sbjct: 216 DDEDEEEISDLEDWL 230


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 171 GQWKWDENIELEYTSAFFTGVYG 239
           GQ+ W  NIEL+  S   TG  G
Sbjct: 171 GQFLWAHNIELDKLSIMKTGAVG 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,694
Number of Sequences: 5004
Number of extensions: 57470
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)