Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0298
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    30   0.48 
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    29   0.83 
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   4.4  
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom...    26   5.9  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 416 VRIVI*TIFIFKVLFETKFNMYGGDNELDLLQQEEAER 303
           +R  +  + I+ +LFE+KFNMYG   E ++    E E+
Sbjct: 547 LRATLGALTIYLLLFESKFNMYGNKAE-EISHMSEVEQ 583


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 217  SFASFLEVGQPTSKSSWRFQVQPRLTTNSPSMSFTNSARSKTGTRND 77
            SFAS     +P++ ++        LTT SP+ SF N++  K  + N+
Sbjct: 868  SFASAFNAPKPSTNTADGKDSASNLTTPSPAFSFGNNSGVKASSNNN 914


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 546 YGLVLKICIWNSTKYFIILYLAITW 620
           + L+LK+ +W +  Y+ +  L  TW
Sbjct: 25  FDLILKVLLWTAPWYYCLTTLFFTW 49


>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 558 LKICIWNSTKYFIILYLAITWDNNPSRCAHRNXXXXXXDNSNSQRNTN 701
           L IC+W S  +F++  LA    NN  + + ++      DNSN+Q  +N
Sbjct: 53  LAICLWLSLTWFLV-ELAHARVNNDLQMSSQS-ANKNDDNSNNQNPSN 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,652
Number of Sequences: 5004
Number of extensions: 60548
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)