Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0298
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0044 - 348439-349539,351979-352301,352418-352550                 29   6.2  
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422...    28   8.2  

>07_01_0044 - 348439-349539,351979-352301,352418-352550
          Length = 518

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -1

Query: 236 LTEEIHFVCFVSGSRATDFEVILAFPGATTTHN*FTINVLHE*-RKKQNGHKKR*FCHYD 60
           LT  + F C V+ +    F   +   G  T+ + F      E  RKKQ   K   +C YD
Sbjct: 19  LTLFVFFTCVVAATGGLIFGYDIGISGGVTSMDPFLRKFFPEVYRKKQMADKNNQYCKYD 78

Query: 59  AQ 54
            Q
Sbjct: 79  NQ 80


>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
            11242381-11242449,11242551-11243480,11243868-11243906,
            11244414-11244478,11244663-11244768,11244850-11245050,
            11247001-11247201,11247756-11247779,11249425-11249586,
            11249676-11249915,11250267-11250479,11250618-11250968,
            11251041-11251193,11251649-11251858,11252049-11252267,
            11252365-11252482,11252879-11253828,11254023-11254220,
            11254294-11254553,11255316-11255505,11255817-11256169,
            11258278-11258386,11258466-11258615,11258748-11258844,
            11259315-11259415
          Length = 2065

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 558  LKICIWNSTKYFIILYLAITWDNNP 632
            +K  I +S+ YF IL LA+ W+N+P
Sbjct: 1436 VKKSIKSSSTYFDILGLAVCWENSP 1460


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,014,515
Number of Sequences: 37544
Number of extensions: 340075
Number of successful extensions: 688
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)