Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0298
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52263| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)           28   8.3  
SB_12293| Best HMM Match : OATP (HMM E-Value=0)                        28   8.3  

>SB_52263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = -3

Query: 180 RSHPGVSRCNHDSQLIHHQCPSRIAQEAKRAQETIVLPL*CTINS------LGYLKTRET 19
           R++P +  C  + + I    PS +  +  R  E I++   C + +      LGYL TR  
Sbjct: 714 RNNPRIL-CIPEEKPIEEWRPSELGHKLDRLAEVIIIDECCKVQTKVLRAILGYLATRPC 772

Query: 18  SIVC 7
            +VC
Sbjct: 773 QVVC 776


>SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)
          Length = 597

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -3

Query: 120 PSRIAQEAKRAQETIVLPL*CTINS--LGYLKTRETSIVC 7
           PS +  +  R  E I++   C +    LGYL TR   +VC
Sbjct: 150 PSELGHKLDRVAEVIIIDECCKVLRAILGYLATRPCQVVC 189


>SB_12293| Best HMM Match : OATP (HMM E-Value=0)
          Length = 1446

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = -3

Query: 738  YLLIKCT---SLVSTNLYFVGYYC 676
            YLLI C     +VST LYF  YYC
Sbjct: 1056 YLLIACGLFFQVVSTLLYFCSYYC 1079


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,037,112
Number of Sequences: 59808
Number of extensions: 430694
Number of successful extensions: 1030
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)