Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0298
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46640.1 68415.m05818 hypothetical protein  and genefinder; e...    30   1.7  
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ...    28   6.8  

>At2g46640.1 68415.m05818 hypothetical protein  and genefinder;
           expression supported by MPSS
          Length = 310

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 707 LQICISLAITVVNYYALLIAVGTSRWVIVPRYS*IQYYKILCTIPDTYL 561
           +Q C+ + +TV  Y  LL  + T   V VP    + YY ++C +  TY+
Sbjct: 259 IQECVGIVMTVEMYCFLLTNI-TKLLVFVPVMHIVFYYYVICFLIYTYI 306


>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 679

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 189 CPTSRNEANEVNLFCQTCDYD 251
           C T ++   + +L C TCDYD
Sbjct: 43  CRTKKHHRTKYHLHCDTCDYD 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,967,811
Number of Sequences: 28952
Number of extensions: 296370
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)