Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0297
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    29   0.84 
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    26   4.5  
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    26   5.9  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   5.9  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   7.8  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  

>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 502 RGLCGFYWEEN--CVYSFISGVIFA 570
           RGLC  YW  N   +YSF+  V FA
Sbjct: 256 RGLCHAYWAPNFWALYSFVDRVAFA 280


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 205 TRDDSLTYRRTLRFNGADAQVI*RARSRLGGNTKKCISE 321
           T DDS+T RR   FN AD   + + R RL   T   +SE
Sbjct: 208 TDDDSITKRRLRSFNSADELPL-KDRVRLPKLTYALLSE 245


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 535 CVYSFISGVIFAKYHQTWNYFTGGRT 612
           C+  F+S  I   YH++W  F   R+
Sbjct: 159 CLTCFLSSFILYAYHESWTKFARERS 184


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 321 SIWSYV*FKYNLTSKDRVMAQEAFILNDVTTI*NLF*CDYS 443
           +++SY+      TS+DR +   + I + V T+   F C Y+
Sbjct: 320 TLFSYLDSNLKSTSRDRYLVYNSLIKSFVNTVLKTFRCRYT 360


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 350 ILKSNIRPNTSEIHFFVFPPSRLLARYI 267
           +LK   R N+S+IH  +  P+R LA  I
Sbjct: 101 VLKGKPRLNSSKIHSVILSPTRELALQI 128


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 525 PIKSTEPSVSSVPRANISSEMLR 457
           P KS EP  S++P  N  SE +R
Sbjct: 339 PFKSAEPLSSAIPLPNPMSEKMR 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,657
Number of Sequences: 5004
Number of extensions: 63990
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)