Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0297
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)              29   4.7  
SB_50063| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)
          Length = 624

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
 Frame = -2

Query: 392 ESFLGHDTVLRGQVIL----KSNIRPNTSEIHFF---VFPP--SRLLARYIT*ASAPLKR 240
           +S LGH     G  +L    K+ I    S I+ F   ++P   S LL       S+ L  
Sbjct: 378 DSNLGHSAYPVGATVLAIIGKTLITTEFSNIYLFTSELYPTILSALLYGLTETISSRLHV 437

Query: 239 SVRLYVKESSRVVSYKKRYLNIGILDKFWECGHFTYS 129
            V L  +  ++  S K R   +  L   W C +F YS
Sbjct: 438 HVLLKFRSGNKKASIKLRVCEVPALMTLWPCPYFMYS 474


>SB_50063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 232 VCMSRN-HPVLFLIKSVI*TSVY*TSFGSVATLRIHPTNSGEQYYA 98
           +C+  N HPV ++I+ +   S+Y  +F     L  + +NSG +Y A
Sbjct: 27  LCLQDNSHPVAYVIRHLTVKSIYNRAFVRQLKLSGNSSNSGTRYPA 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,841,511
Number of Sequences: 59808
Number of extensions: 458827
Number of successful extensions: 1027
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)