Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0296
         (334 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    27   0.052
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   1.9  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   2.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   3.4  

>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 0.052
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 160 VNEGAPSSK-RAKQPTFDEVYNQSSPTNTTVYCGGF 264
           ++EGAP SK      T+   +  + PTNT++Y G +
Sbjct: 248 LDEGAPPSKINLGLGTYGRGFALADPTNTSLYAGTY 283


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 148  PAKGVNEGAPSSKRAKQPTFDEVYNQSSPTNTTVYC 255
            P+K V     +S  AK  +FD+ +  +   + T+ C
Sbjct: 1293 PSKKVTVSPSASVPAKIASFDDTFTTTYKEDVTLPC 1328



 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 128  FVRMDLDPSHWPFIAWMAASASAF 57
            FV +DLDP+ W  +   A + + F
Sbjct: 1549 FVLLDLDPACWYHLRVTAHNNAGF 1572


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 213 SL*SKLTDKHHSLLWRF 263
           SL  KL D HH LL  F
Sbjct: 127 SLVIKLVDYHHQLLGHF 143


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 157 PSLVVYALTSSYV 119
           PSL+++  TS+YV
Sbjct: 439 PSLIIHVSTSAYV 451


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,379
Number of Sequences: 336
Number of extensions: 1413
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6473381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.4 bits)