Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0296
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 45 3e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 41 4e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 41 6e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 1e-04
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 39 2e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 5e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 38 5e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 37 0.001
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.002
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.004
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 35 0.004
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 33 0.009
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.009
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 33 0.011
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 33 0.015
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 32 0.020
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 32 0.026
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 31 0.035
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 31 0.061
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.11
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 0.14
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.25
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 0.33
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 27 0.75
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 1.3
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 26 1.3
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 25 3.0
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 4.0
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 24 5.3
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 24 7.0
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 24 7.0
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 24 7.0
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 23 9.2
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 23 9.2
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 44.8 bits (101), Expect = 3e-06
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 153
DPQT S+GY FV F + D ++A+ M GQ G R IR +T K A
Sbjct: 221 DPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA 269
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 41.1 bits (92), Expect = 4e-05
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
RD T +S GYA+V+F D E A+ +N + R R WS R P + + G
Sbjct: 113 RDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTG 168
Score = 29.9 bits (64), Expect = 0.11
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
+KGY FV F A AAI+ +NG L + +
Sbjct: 207 AKGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 40.7 bits (91), Expect = 6e-05
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGA---- 174
DP T S+ Y FV F + + + A+ M G R +R + ++ K A + A
Sbjct: 217 DPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIV 276
Query: 175 PSSKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270
P+S +QP D P NTTV+ GG S
Sbjct: 277 PTSTSNRQPNQDLC--SMDPLNTTVFVGGLAS 306
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.9 bits (89), Expect = 1e-04
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
+SKGY FVS+ A+AAI+AMN Q+L ++ I +++ ++ KG G
Sbjct: 138 RSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKR-EGKGERHG 186
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 39.1 bits (87), Expect = 2e-04
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVN-EGAPSSKRAKQPT 204
+G AF +F +A+ +Q +NG + R +R W + PPA+ E KRA +
Sbjct: 273 RGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAERERVERGKQEKRAVEER 332
Query: 205 FDEVYNQSSPTN 240
+++ + S N
Sbjct: 333 KNQLKSPFSVAN 344
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.5 bits (83), Expect = 5e-04
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 10 PQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 156
P T SKGY FVSF +A AI +NG G + + N++ ++ K
Sbjct: 456 PSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRK 504
Score = 26.6 bits (56), Expect = 0.99
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +1
Query: 34 YAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS-----TRKPPAKGVNEGAPSSKRAKQ 198
+AF++F K A+ AI ++NG +++ ++ + GV++ S+ +
Sbjct: 68 FAFITFENKCSADNAIASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKAK 127
Query: 199 PTFDEVYNQSSPTNTTV 249
F ++ + T TV
Sbjct: 128 IRFSKIEKYTKETRPTV 144
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 37.5 bits (83), Expect = 5e-04
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKP 147
V DP+T KGY F F A++ +N LG R IR + + P
Sbjct: 39 VLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDP 87
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.7 bits (81), Expect = 0.001
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = +1
Query: 16 TLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR---TNWSTRKPPAKGVNEGAPSSK 186
T +SKG+ V F + DA ++I+ +NG G R ++ +++T P V G PS
Sbjct: 316 TGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYAHYATPLPAVPTVLSGLPSV- 374
Query: 187 RAKQPTFDEVYNQSSPTNTTVYCGGFL 267
A P + +SP + FL
Sbjct: 375 -AYTPPVMHIPTTNSPLTPQSFTNSFL 400
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 35.5 bits (78), Expect = 0.002
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
VRD + K++G+ FVSF A + NG+++GSR ++ + +T VNE
Sbjct: 62 VRDREG-KTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTID 120
Query: 181 SK 186
SK
Sbjct: 121 SK 122
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 34.7 bits (76), Expect = 0.004
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST-RKPPAKGVNEGAP 177
V +P+T +++GY FV+F DA+ A + + + L R +R +++T RK ++
Sbjct: 37 VTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKA 96
Query: 178 SSKRAKQ 198
K +Q
Sbjct: 97 VKKTIRQ 103
Score = 31.9 bits (69), Expect = 0.026
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVN-EGAPSSKRAKQPTF 207
G+AFV + AE A+ ++NG + R I +W+ K + + A S + K+
Sbjct: 149 GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKDAFEATTLKDASSEEENKEFVS 208
Query: 208 DE 213
DE
Sbjct: 209 DE 210
Score = 24.6 bits (51), Expect = 4.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
+SKG+ F+ F+ A A++ +NG+ + + I
Sbjct: 537 RSKGFGFMQFISHKYALMALRWLNGREITVKKI 569
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 34.7 bits (76), Expect = 0.004
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 10 PQTLKSKGYAFVSFVKKADAEAAIQAMNGQWL--GSRSIRTNWSTRKPPA 153
P+T S+ +AFV + DAE A ++G+ L G +R W+ + PP+
Sbjct: 41 PRTRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAKQPPPS 90
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.5 bits (73), Expect = 0.009
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
VR+ T KS GYAFV F ++ D + A +A G L R I
Sbjct: 132 VRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRI 171
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 33.5 bits (73), Expect = 0.009
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST 138
V DP++ + KGY F + A A +A++ +N G+R +R ++ T
Sbjct: 37 VIDPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVDFPT 82
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 33.1 bits (72), Expect = 0.011
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 150
+R+P T S+G+ F+SF +A +AI +N Q R + + R P
Sbjct: 133 MREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRP 182
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 32.7 bits (71), Expect = 0.015
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST 138
DPQ+ + KG+ +V+F A+ ++ MNG ++ R R ++ST
Sbjct: 400 DPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDFST 442
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 32.3 bits (70), Expect = 0.020
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 13 QTLKSKGYAFVSFVKKADAEAAIQAMNGQWLG-SRSIRTNWSTRKP-PAKGVNEGAPSSK 186
+ L S+G AF++++ +A+A+ A +AM Q L + W+T P PA +
Sbjct: 205 RVLNSRGIAFITYLNEANAQFAKEAMAHQSLDHDECLNVRWATTDPNPASQARNQRRLEE 264
Query: 187 RA 192
RA
Sbjct: 265 RA 266
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.9 bits (69), Expect = 0.026
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
VR L G AFV+F + D + AI+ +NG+ L R I
Sbjct: 80 VRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREI 119
Score = 31.5 bits (68), Expect = 0.035
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
+ +G+ FVSF D AI+ MNG+ +G ++
Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTL 288
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.5 bits (68), Expect = 0.035
Identities = 21/59 (35%), Positives = 25/59 (42%)
Frame = +1
Query: 10 PQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 186
P S G+ FV F KA A AA+ AMNG L + S + A SSK
Sbjct: 659 PGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSK 717
Score = 25.4 bits (53), Expect = 2.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
S+ +AF+ F + DA+ AI+ +N ++ + I +
Sbjct: 45 SRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVH 79
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 30.7 bits (66), Expect = 0.061
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW-STRKPPAK 156
VRD +T KSKG+AF+ + + A+ M L R +R + ++ K P K
Sbjct: 63 VRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASYKVPQK 115
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.9 bits (64), Expect = 0.11
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 10 PQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
P + SKGY FV+F + A A +NG +G + I ++ RK
Sbjct: 419 PNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERK 463
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.14
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
RD Q +SKG+ ++ + A A++ MNG L R++R
Sbjct: 373 RDDQN-RSKGFGYIQYRNPISARNALEKMNGFDLAGRNMR 411
Score = 26.6 bits (56), Expect = 0.99
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWL 105
VRD + +SKG A+V F + +AAI A++G+ L
Sbjct: 272 VRDKISGRSKGVAYVEFCHEDSVQAAI-ALSGKRL 305
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 28.7 bits (61), Expect = 0.25
Identities = 19/77 (24%), Positives = 30/77 (38%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
+RD +T S YAF+ F K E A M + I ++S +
Sbjct: 276 IRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFSQSVARYRQYYNSNRD 335
Query: 181 SKRAKQPTFDEVYNQSS 231
KR+ + D Y++ S
Sbjct: 336 RKRSSSRSDDREYHRRS 352
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.3 bits (60), Expect = 0.33
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQ 99
SKG+ F F +DAE AI ++G+
Sbjct: 350 SKGFCFCEFKNPSDAEVAISGLDGK 374
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 0.75
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -1
Query: 193 LLSYYWARL---HSHPSLVVYALTSSYVWILIPATGHSLPGWQL 71
+L YY RL S ++ V+++ ++ +L GHS P WQL
Sbjct: 16 ILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQL 59
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 1.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
VRDP+T KG+A++ F + A+ + R++R
Sbjct: 302 VRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLR 342
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 26.2 bits (55), Expect = 1.3
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
+D +T ++KG+AFVS+ + A A ++G + +R +S
Sbjct: 235 KDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFS 278
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.0 bits (52), Expect = 3.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 133 STRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTNTT 246
S+R PP V + + KQP F ++ + SSP +++
Sbjct: 472 SSRSPPLPEVESNKENDIKRKQP-FHDLMDSSSPDDSS 508
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 24.6 bits (51), Expect = 4.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 1 VRDPQTLKS-KGYAFVSFVKKADAEAAIQAMNGQWLGSR 114
VR P+ KG+ +V DAE A+ A G+ LG+R
Sbjct: 786 VRIPKRFNQHKGFGYVVMTTNQDAENALSAA-GKQLGNR 823
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 5.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 3 TRSSNAQIQGLCFCIICKES 62
T +S ++I G FC +C+E+
Sbjct: 493 TDTSESRITGFYFCCLCREN 512
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 23.8 bits (49), Expect = 7.0
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +2
Query: 134 QRVNHQRRV*MKARPVVREQNSQHLT-KFIIKAHRQTPQFTVA 259
QR+ R+ V+ E +T F+IK H P F VA
Sbjct: 323 QRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAFDVA 365
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -1
Query: 259 RHSKLWCLSVSFDYKLRQMLAVLLSYYWARLH 164
RH W L Y LR + + +Y RLH
Sbjct: 250 RHCLCWSLPYFQHYDLRFIASFFTQFYRLRLH 281
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 23.8 bits (49), Expect = 7.0
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -1
Query: 271 NLRNRHSKLWCLSVSFDYKLRQMLAVLLSYYWARLHSHPSLVVY 140
NLR H KL L S+D KL++ L+ L A L P+ + Y
Sbjct: 556 NLRKLHEKLQSLFASYD-KLQEDLSKRLGKK-ATLRKSPAKLYY 597
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 23.4 bits (48), Expect = 9.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 181 SKRAKQPTFDEVYNQSSPTNTTV 249
S++ Q T+ ++YN+ PT V
Sbjct: 89 SRKVAQTTYKKIYNEYPPTKILV 111
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 23.4 bits (48), Expect = 9.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 97 QWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTNT 243
Q+LG + ++ P + + P KR + PT D Y S TN+
Sbjct: 12 QFLGKQGLKAKNPVSTPNSHFRSASNPR-KRREPPTIDTGYPDRSDTNS 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.130 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,234,596
Number of Sequences: 5004
Number of extensions: 23503
Number of successful extensions: 108
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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