Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0296
(334 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 2e-12
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 50 6e-07
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 41 3e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.002
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.003
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.004
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.004
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.004
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.008
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 36 0.011
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.011
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.014
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.014
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.019
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.025
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.058
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 33 0.058
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.10
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 32 0.10
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 32 0.13
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 31 0.18
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.23
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 31 0.23
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40) 31 0.31
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 30 0.41
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.54
SB_41292| Best HMM Match : RRM_1 (HMM E-Value=0.0085) 30 0.54
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.94
SB_28628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.94
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.94
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 29 1.2
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 28 2.2
SB_52410| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 27 2.9
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 27 3.8
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 27 5.0
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 27 5.0
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 27 5.0
SB_37480| Best HMM Match : rve (HMM E-Value=4.7e-22) 27 5.0
SB_53761| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_24980| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 26 6.6
SB_21753| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 26 6.6
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 26 8.8
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027) 26 8.8
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 67.7 bits (158), Expect = 2e-12
Identities = 35/86 (40%), Positives = 51/86 (59%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
V+DP KSKG+ FVSFV++ DA AI M+ +G + ++TNW+ RK +
Sbjct: 545 VKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARK----------NN 594
Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCG 258
+ K +D+V++QSS NTTVY G
Sbjct: 595 PTQTKPLVWDDVFHQSSQLNTTVYVG 620
Score = 31.9 bits (69), Expect = 0.13
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 34 YAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 156
Y FV F ADA+ A M+ + + + ++ NW+T P K
Sbjct: 410 YCFVEFETHADAQEAKFRMDQRTVMDKKLKVNWATNHPGMK 450
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 49.6 bits (113), Expect = 6e-07
Identities = 24/62 (38%), Positives = 41/62 (66%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
+RD T SKG+AF++F ++AAI+AMNGQ+L +R I +++ +K +KG G+ +
Sbjct: 133 MRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK-ESKGERHGSAA 191
Query: 181 SK 186
+
Sbjct: 192 ER 193
Score = 31.1 bits (67), Expect = 0.23
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
+D T +GY FV F+ + DA+ AI+ MN + + IR N
Sbjct: 46 KDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKVYGKPIRVN 87
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 40.7 bits (91), Expect = 3e-04
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 153
DP +K KG+AFV + A+ A++ MNG LG R+I+ + P A
Sbjct: 136 DPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKVGRPSNVPQA 184
Score = 33.5 bits (73), Expect = 0.044
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGV 162
++P T K KGY F+ + + A AI +MN LG + +R + P + +
Sbjct: 232 KEPMTGKHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRVGRAITPPTSSAM 284
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
+ D +T + +G+AFV+F K + E AI ++GQ RS++ N R +G G
Sbjct: 261 ISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVN-QARSREQRGGGRG 316
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 37.5 bits (83), Expect = 0.003
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
DP+ KSKG+ FVSF +AE A+ +NG+ +G R +
Sbjct: 143 DPEG-KSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179
Score = 29.5 bits (63), Expect = 0.71
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 156
SKG+ FV F +A A+ MNG+ L S+ + + R+ K
Sbjct: 251 SKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQRREERK 294
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 37.1 bits (82), Expect = 0.004
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
RD T +S+G+AFV F +K DAE A+ M+ L + W P + G
Sbjct: 49 RDRNTHESRGFAFVRFYEKRDAEDAMDCMDATCLMAEKFVFRWRDMVVPRIPIGRG 104
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 37.1 bits (82), Expect = 0.004
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
V+D T SKGYAF +V + AIQ +NG LG + +
Sbjct: 705 VKDSATGLSKGYAFCEYVDLGITDVAIQGLNGMQLGDKKL 744
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 37.1 bits (82), Expect = 0.004
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
+RD T +S GYAFV++ DA A++ MNG L +++++ +++
Sbjct: 59 IRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFA 103
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 35.9 bits (79), Expect = 0.008
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 10 PQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
P + +GY FV F KK DA A++ +N + + SR++ +W+
Sbjct: 425 PNRGEPRGYCFVEFKKKEDARKALRGLNKKIVLSRALVVDWA 466
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 35.5 bits (78), Expect = 0.011
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
+D T +SKG+AF++FV + DA AI+ ++G + W+
Sbjct: 214 KDKFTNQSKGFAFINFVHREDAARAIEVLSGFGYDHLILNVEWA 257
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 156
D +T KGYA V + +A++A++A+NG + ++I +W+ + P+K
Sbjct: 327 DRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNISVDWAFIRGPSK 376
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 35.1 bits (77), Expect = 0.014
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
+ D +T +SKGY FV F + A+ A++ MNG L R ++
Sbjct: 274 IYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLK 314
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 35.1 bits (77), Expect = 0.014
Identities = 14/41 (34%), Positives = 28/41 (68%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
+RD +T +S+G AF+ F+ + A+ A+ A+N + + R+I+
Sbjct: 42 LRDKETRESRGVAFILFIDRQSAQNAVAAVNKKQMFGRTIK 82
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 34.7 bits (76), Expect = 0.019
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKG 159
VRD +T K KG+ F+ + + A+ NG LG R+IR + + KG
Sbjct: 11 VRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVDHCSNYRRPKG 63
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 34.3 bits (75), Expect = 0.025
Identities = 12/37 (32%), Positives = 26/37 (70%)
Frame = +1
Query: 13 QTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
Q +S+G+ FV+F DA+ A++++NG+ + R+++
Sbjct: 94 QEPRSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLK 130
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 33.1 bits (72), Expect = 0.058
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
D QT SK + FVS+ A+ AIQ MNG +G++ ++
Sbjct: 296 DKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLK 334
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 33.1 bits (72), Expect = 0.058
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
D QT SK + FVS+ A+ AIQ MNG +G++ ++
Sbjct: 311 DKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLK 349
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 32.3 bits (70), Expect = 0.10
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 96
+RD T KG FV + KKA+A+AAI +++G
Sbjct: 165 LRDKSTGLPKGCGFVLYDKKAEAQAAISSLSG 196
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
S G+ FV + DA+ AI +NG +G++ ++ +S
Sbjct: 87 SYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFS 123
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNG 96
D Q + KG+ FV+ + +A+ AIQ +NG
Sbjct: 309 DWQRQQCKGFCFVTMATQEEAQNAIQTLNG 338
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 32.3 bits (70), Expect = 0.10
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93
VRD ++ KSKGY FVSF D A++ MN
Sbjct: 249 VRDKKSNKSKGYGFVSFKDPNDFIKAMREMN 279
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
+RD +T +S YAF+ F K D E A M+ + R I ++S
Sbjct: 152 IRDQKTGESLQYAFIEFEKDEDCERAYFKMDNVLIDDRRIHVDFS 196
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 31.5 bits (68), Expect = 0.18
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
V D +T K KGY F + + A +A++ +NG L R++R +
Sbjct: 57 VFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRVD 99
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 31.1 bits (67), Expect = 0.23
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 13 QTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG--APSSK 186
+TLK +G AFV F A A+++M G + +R ++ K A EG P K
Sbjct: 44 KTLKMRGQAFVVFKDIGSATNALRSMQGFPFYDKPMRIQYAKGKSDAVAKAEGTFVPREK 103
Query: 187 RAKQ 198
+ K+
Sbjct: 104 KPKE 107
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLG 108
V+D T +++G +V FVK + A A + M+G+ +G
Sbjct: 55 VKDKATKENRGVCYVKFVKASSAALACEEMDGRNIG 90
>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
Length = 768
Score = 30.7 bits (66), Expect = 0.31
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 154 KGVNEGAPSSKRAKQPTFDEVYNQSSPTNTT 246
K N PSS + + TF+ YN S P++TT
Sbjct: 228 KSRNTSKPSSTTSSKSTFESGYNNSKPSSTT 258
Score = 29.5 bits (63), Expect = 0.71
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 133 STRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTNT 243
S++ G N PSS + + TF+ YN S P +T
Sbjct: 240 SSKSTFESGYNNSKPSSTTSSKSTFESGYNTSKPPST 276
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 30.3 bits (65), Expect = 0.41
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
G+AFV + DAE A++ ++G + R+IR +S +
Sbjct: 41 GFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFSNNR 78
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 29.9 bits (64), Expect = 0.54
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS---TRKPPAKGVNE 168
G+AF F + DAE A++ ++G+++ + +R + +R P G NE
Sbjct: 69 GFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELAKGPSRGRPRMGSNE 117
>SB_41292| Best HMM Match : RRM_1 (HMM E-Value=0.0085)
Length = 292
Score = 29.9 bits (64), Expect = 0.54
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQA---MNGQWL-GSRSIRTNWSTRKPPA 153
V PQ L +FVK A+AA++A +NG+WL ++ +++RK P+
Sbjct: 66 VEGPQFLGGNTGGLYAFVKFYSAKAALRAKEEVNGKWLIDGNILKVQFASRKKPS 120
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 29.1 bits (62), Expect = 0.94
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQ 84
VRD +T ++KGY +V F K + A A++
Sbjct: 85 VRDHKTRENKGYGYVKFHKSSTAAMALE 112
>SB_28628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 29.1 bits (62), Expect = 0.94
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 193 LLSYYWARLHSHPSLVVYALTSSYVWILIPATGHSLP 83
L +YY LH+HP L +T +++ L P LP
Sbjct: 6 LSTYYPIPLHTHPKLTYTPVTPNHITTLYPCMTKRLP 42
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.1 bits (62), Expect = 0.94
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 186
G+AF F + DAE A++ ++G+++ + R + K P++G A + K
Sbjct: 39 GFAFCVFEDRRDAEDAVRELDGRYICGQRARVELA--KGPSRGRPRQASNEK 88
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
+RD +T KG+ +V F K A++ N ++ G R IR S KP + ++
Sbjct: 88 IRDRKTGIGKGFGYVLFESKDAVVFALKMNNAEFKG-RKIRVFPSKDKPQTEFISHIQVR 146
Query: 181 SKRAKQPTFDEVY-NQSSPTNT 243
+ P+ + +S P NT
Sbjct: 147 FRDNANPSLKATHLVESKPHNT 168
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKG 159
+RD ++ +S+G+ FV AI+ MN +G R+I + K +G
Sbjct: 40 LRDKESGRSRGFGFVLLQSADQIAPAIEKMNQSSVGGRNITVALALDKTENRG 92
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAE 72
DP T +S+G+ FV F K DA+
Sbjct: 149 DPNTRRSRGFGFVRFKKDEDAK 170
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST 138
+P S+G+AFV + +AE +A NG+ + +IR + +
Sbjct: 240 NPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRVAYGS 283
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADA-EAAIQAMN--GQWLGSRSIR 123
VR T SKGY FV + + +A +A Q +N +++G R +R
Sbjct: 145 VRSEVTGDSKGYGFVEYATRENAMQAKQQLLNTASKYIGGRILR 188
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMN 93
DP T +KG+AF +F ++ A AI +N
Sbjct: 187 DPATGLNKGFAFCTFTEQTSAYQAITTLN 215
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQ-WLGSRSI 120
+GY FV F DAE A+ +NG+ +G R +
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLIGERVV 753
>SB_52410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 55 KKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG-APSSKRAKQPTFDEVYNQSS 231
KK + +Q NG + R N + KP AK + S++R + +++Y ++
Sbjct: 64 KKLSTDQQVQEENGNTRHDSASRQNSNIHKPLAKELERNEVQSNERRARSWSEQIYEKTD 123
Query: 232 P 234
P
Sbjct: 124 P 124
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
R ++ +SKGYAFV F A+ A M+ + R ++
Sbjct: 131 RSKKSARSKGYAFVEFACDEVAKIAADTMHNYMMFGRLLK 170
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMN 93
+++GYAFV + K DA+ ++ +N
Sbjct: 112 QNRGYAFVVYTSKDDAKRCVKTLN 135
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
V + + K +GYAF+ + + D AA + +G+ + R I
Sbjct: 38 VYNSKASKPRGYAFIEYEHERDMHAAYKHADGKKIDGRRI 77
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWL 105
K + Y FV F K+ A AI +NG ++
Sbjct: 33 KIRDYGFVYFAKRESAVQAIDGINGAYI 60
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMN 93
+GYA+V F + DA+ A+ A+N
Sbjct: 36 EGYAYVVFKENKDADRAVAALN 57
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 201
S+G+A+V +V + E A++ M+G + + I S P + V P+ +R P
Sbjct: 1197 SRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQ-SVLPPRPRDVR---PAYRRPSPP 1251
>SB_37480| Best HMM Match : rve (HMM E-Value=4.7e-22)
Length = 900
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 13 QTLKSKGYAFVSFVKKADAEAAIQAMN 93
Q+LKS G AFV+FV + ++ ++ N
Sbjct: 549 QSLKSLGVAFVTFVNEESSQKCLKDFN 575
>SB_53761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 130 WSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTNTTV 249
+S PA + + P + P D + Q SPT TT+
Sbjct: 16 FSAENIPAPEITDYGPLGQTFNVPKLDLISKQLSPTGTTI 55
>SB_24980| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 154 KGVNEGAPSSKRAKQPTFDEVYNQSSPTNTTV 249
KGVN+ A S TF + Y S +NTT+
Sbjct: 35 KGVNQSACQSLSNGLSTFAKPYGYGSSSNTTI 66
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSF 51
VRD +T K KGY FV+F
Sbjct: 138 VRDRETNKFKGYCFVNF 154
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAA 78
++D T KSKGY FV+ AE A
Sbjct: 42 IKDRVTKKSKGYGFVTMATSDAAELA 67
>SB_21753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 26.2 bits (55), Expect = 6.6
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWL--GSRSIRTN-WSTRKPPAKGVNEG-- 171
DP+ +S G+ F+S E A++A L GS +R W+ RKP +G EG
Sbjct: 106 DPRENESVGFIFMS-------EDALRAEKLMILIHGSGVVRAGQWARRKPKKEGAKEGTA 158
Query: 172 APSSKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270
+SK +Q ++ ++S ++ F+S
Sbjct: 159 TTTSKEREQEISCKLGSESPESHFDYVWNTFIS 191
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMN 93
KG+AF+ F K AE +Q N
Sbjct: 129 KGFAFIEFESKQQAEHVVQMFN 150
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKP 147
K++ FV+F A+ AI MNG + IR + + R+P
Sbjct: 141 KNRSQGFVTFDTWEAADKAIDEMNGLKVQHVHIRVSMARRQP 182
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
SKG V++ A AAI+ NG+ +SI+ + + P G G
Sbjct: 217 SKGECTVTYEDPPTASAAIEWFNGKDFMGQSIKVELAEARTPKFGAAGG 265
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQ 99
DP + +KG+AF +F K +A+ A++ ++ +
Sbjct: 186 DPISGLTKGFAFCTFSNKDEAQNAVKKLDNK 216
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 96
VRD +T K KG+ F+ + + A+ NG
Sbjct: 11 VRDKKTGKQKGFCFLCYEDQRSTILAVDNFNG 42
>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
Length = 253
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
G +V F + DAE A+ +N +W + I
Sbjct: 113 GNVYVKFRYEEDAEKAVNDLNNRWYNGQPI 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.130 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,294,852
Number of Sequences: 59808
Number of extensions: 176581
Number of successful extensions: 695
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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