BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0296 (334 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 99 9e-22 U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 99 9e-22 U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 99 9e-22 U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 99 9e-22 AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 89 5e-19 Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 82 1e-16 Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 48 2e-06 Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 48 2e-06 Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 45 1e-05 U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 45 1e-05 U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 45 1e-05 AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 45 1e-05 AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 45 1e-05 AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 43 6e-05 Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 40 3e-04 U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 40 4e-04 Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 39 0.001 Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 38 0.001 Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 38 0.002 U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 37 0.003 Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 36 0.005 Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 36 0.007 Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 36 0.009 Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 36 0.009 Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 36 0.009 U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 36 0.009 U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 36 0.009 AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 35 0.012 AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 35 0.012 AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 35 0.012 AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 35 0.012 AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 33 0.038 Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 33 0.066 AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 33 0.066 U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 32 0.087 D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 32 0.087 AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 32 0.087 AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 32 0.087 AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 32 0.087 AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 32 0.087 AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 32 0.087 AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 32 0.087 AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 32 0.087 Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 32 0.11 Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 32 0.11 Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 31 0.20 U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 31 0.20 U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 31 0.20 U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 31 0.20 EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 31 0.20 EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 31 0.20 Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 0.26 AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 0.26 Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 30 0.35 U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 30 0.46 AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 30 0.46 AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 30 0.46 AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 30 0.46 Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 29 0.61 Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 29 0.61 DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 29 0.61 AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 29 0.81 AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 29 1.1 AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 29 1.1 AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 28 1.4 AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical ... 28 1.4 Z74031-6|CAB54239.1| 227|Caenorhabditis elegans Hypothetical pr... 28 1.9 Z74031-5|CAA98457.1| 225|Caenorhabditis elegans Hypothetical pr... 28 1.9 Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 28 1.9 Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 25 2.3 Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 25 2.3 Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 25 2.4 Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical pr... 27 2.5 U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 27 2.5 U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 27 2.5 U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 27 2.5 U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 27 2.5 Z81473-1|CAB03897.1| 302|Caenorhabditis elegans Hypothetical pr... 27 3.3 Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr... 27 3.3 Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr... 27 3.3 Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 27 3.3 U41994-3|AAO91712.1| 251|Caenorhabditis elegans Rnase h protein... 27 3.3 U40797-8|AAL08029.1| 332|Caenorhabditis elegans Serpentine rece... 27 3.3 AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. 27 3.3 Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 27 4.3 Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 27 4.3 Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 27 4.3 Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 27 4.3 Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 27 4.3 Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 27 4.3 U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 27 4.3 U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 27 4.3 U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 27 4.3 DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 27 4.3 Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 26 5.7 Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 26 5.7 Z48241-8|CAD44101.1| 589|Caenorhabditis elegans Hypothetical pr... 26 5.7 Z48241-7|CAA88287.1| 1026|Caenorhabditis elegans Hypothetical pr... 26 5.7 Z48241-2|CAB54194.1| 624|Caenorhabditis elegans Hypothetical pr... 26 5.7 Z36237-4|CAD44107.1| 589|Caenorhabditis elegans Hypothetical pr... 26 5.7 Z36237-3|CAA85272.1| 1026|Caenorhabditis elegans Hypothetical pr... 26 5.7 U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 26 5.7 Z73105-1|CAA97442.2| 525|Caenorhabditis elegans Hypothetical pr... 26 7.5 Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 26 7.5 Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 26 7.5 EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 26 7.5 EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 26 7.5 EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 26 7.5 AY515708-1|AAR99658.1| 525|Caenorhabditis elegans bestrophin 1 ... 26 7.5 AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 26 7.5 U50311-1|AAA92307.1| 492|Caenorhabditis elegans Hypothetical pr... 25 10.0 >U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical protein C18A3.5f protein. Length = 295 Score = 98.7 bits (235), Expect = 9e-22 Identities = 48/90 (53%), Positives = 62/90 (68%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180 +RD T KSKGY FVS+ K+ +AE AI+ MNGQWLG R+IRTNW+TRKP ++ PS Sbjct: 54 IRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG----DQEKPS 109 Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270 K ++DE+YNQ+S NT+VY G S Sbjct: 110 HYNEK--SYDEIYNQTSGDNTSVYVGNIAS 137 Score = 38.3 bits (85), Expect = 0.001 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 6/73 (8%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW----STRKPP--AKGV 162 + + + K +GYAFV F K A AI MN Q +G + +R +W T K P + G Sbjct: 153 ITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGSYGY 212 Query: 163 NEGAPSSKRAKQP 201 G SS QP Sbjct: 213 GYGNSSSGGNSQP 225 >U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical protein C18A3.5e protein. Length = 305 Score = 98.7 bits (235), Expect = 9e-22 Identities = 48/90 (53%), Positives = 62/90 (68%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180 +RD T KSKGY FVS+ K+ +AE AI+ MNGQWLG R+IRTNW+TRKP ++ PS Sbjct: 64 IRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG----DQEKPS 119 Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270 K ++DE+YNQ+S NT+VY G S Sbjct: 120 HYNEK--SYDEIYNQTSGDNTSVYVGNIAS 147 Score = 38.3 bits (85), Expect = 0.001 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 6/73 (8%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW----STRKPP--AKGV 162 + + + K +GYAFV F K A AI MN Q +G + +R +W T K P + G Sbjct: 163 ITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGSYGY 222 Query: 163 NEGAPSSKRAKQP 201 G SS QP Sbjct: 223 GYGNSSSGGNSQP 235 >U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical protein C18A3.5a protein. Length = 408 Score = 98.7 bits (235), Expect = 9e-22 Identities = 48/90 (53%), Positives = 62/90 (68%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180 +RD T KSKGY FVS+ K+ +AE AI+ MNGQWLG R+IRTNW+TRKP ++ PS Sbjct: 167 IRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG----DQEKPS 222 Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270 K ++DE+YNQ+S NT+VY G S Sbjct: 223 HYNEK--SYDEIYNQTSGDNTSVYVGNIAS 250 Score = 38.3 bits (85), Expect = 0.001 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 6/73 (8%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW----STRKPP--AKGV 162 + + + K +GYAFV F K A AI MN Q +G + +R +W T K P + G Sbjct: 266 ITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGSYGY 325 Query: 163 NEGAPSSKRAKQP 201 G SS QP Sbjct: 326 GYGNSSSGGNSQP 338 Score = 32.7 bits (71), Expect = 0.066 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +1 Query: 34 YAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135 YAFV F A A+Q MN + L R ++ NW+ Sbjct: 86 YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWA 119 >U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical protein C18A3.5b protein. Length = 376 Score = 98.7 bits (235), Expect = 9e-22 Identities = 48/90 (53%), Positives = 62/90 (68%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180 +RD T KSKGY FVS+ K+ +AE AI+ MNGQWLG R+IRTNW+TRKP ++ PS Sbjct: 135 IRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG----DQEKPS 190 Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270 K ++DE+YNQ+S NT+VY G S Sbjct: 191 HYNEK--SYDEIYNQTSGDNTSVYVGNIAS 218 Score = 38.3 bits (85), Expect = 0.001 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 6/73 (8%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW----STRKPP--AKGV 162 + + + K +GYAFV F K A AI MN Q +G + +R +W T K P + G Sbjct: 234 ITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGSYGY 293 Query: 163 NEGAPSSKRAKQP 201 G SS QP Sbjct: 294 GYGNSSSGGNSQP 306 >AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical protein Y46G5A.13 protein. Length = 434 Score = 89.4 bits (212), Expect = 5e-19 Identities = 44/98 (44%), Positives = 58/98 (59%), Gaps = 12/98 (12%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180 +RD T K KGY FVS+ ++ DAE AI MNG WLG R+IRTNW+TRKP G G Sbjct: 164 IRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDEDGERGGDRG 223 Query: 181 SKRA------------KQPTFDEVYNQSSPTNTTVYCG 258 +R + T+DE++NQ++ NT+VY G Sbjct: 224 DRRGGGGGGRDRYHNQSEKTYDEIFNQAAADNTSVYVG 261 Score = 40.3 bits (90), Expect = 3e-04 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW----STRKPPAKGVNE 168 + + +T K +GYAFV F K A AI MN +G + +R +W + KP +G Sbjct: 281 INEVRTFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVRCSWGKSGDSGKPSERGSGG 340 Query: 169 GAPS 180 G S Sbjct: 341 GGGS 344 Score = 32.7 bits (71), Expect = 0.066 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = +1 Query: 34 YAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKR 189 YAFV F A A+Q+ NG+ L + + W+ +P G N P + R Sbjct: 80 YAFVEFSDHNQATLALQSHNGRELLEKEMHVTWAF-EPREPGENRSKPETSR 130 >Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical protein C07A4.1 protein. Length = 360 Score = 81.8 bits (193), Expect = 1e-16 Identities = 40/86 (46%), Positives = 54/86 (62%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180 +RD QT KSKGY FVSF K +AE AI MNG+W+G R++RTNW+ RK S Sbjct: 167 IRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARK----------NS 216 Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCG 258 + + TF++V+N + NT+VY G Sbjct: 217 EENRDKLTFEQVFNSTKADNTSVYVG 242 Score = 37.9 bits (84), Expect = 0.002 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS-TRKPPAKGVN 165 + + + K++ YAFV + KK A AI MNG+ + +R +W T+ P + +N Sbjct: 263 IAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWGRTQAVPNQALN 318 >Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical protein F18H3.3b protein. Length = 566 Score = 47.6 bits (108), Expect = 2e-06 Identities = 23/56 (41%), Positives = 32/56 (57%) Frame = +1 Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171 RD + S GYA+V+F + ADAE A+ MN + + R +R WS R P A+ G Sbjct: 90 RDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNG 145 Score = 31.5 bits (68), Expect = 0.15 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120 SKGY FV F + A+ AI+ +NG L + + Sbjct: 184 SKGYGFVHFETEHSAQTAIEKVNGMLLSDKKV 215 >Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical protein F18H3.3a protein. Length = 692 Score = 47.6 bits (108), Expect = 2e-06 Identities = 23/56 (41%), Positives = 32/56 (57%) Frame = +1 Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171 RD + S GYA+V+F + ADAE A+ MN + + R +R WS R P A+ G Sbjct: 90 RDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNG 145 Score = 31.5 bits (68), Expect = 0.15 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120 SKGY FV F + A+ AI+ +NG L + + Sbjct: 184 SKGYGFVHFETEHSAQTAIEKVNGMLLSDKKV 215 >Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein C08B11.5 protein. Length = 388 Score = 45.2 bits (102), Expect = 1e-05 Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180 +RD + SKG+AF++F ++ A++AMNGQ+L +R+I +++ ++ +KG G + Sbjct: 133 MRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR-DSKGERHGTAA 191 Query: 181 SK--RAKQPTF 207 + A+ P F Sbjct: 192 ERMLAAQNPLF 202 >U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding protein protein. Length = 398 Score = 45.2 bits (102), Expect = 1e-05 Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180 +RD + SKG+AF++F ++ A++AMNGQ+L +R+I +++ ++ +KG G + Sbjct: 143 MRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR-DSKGERHGTAA 201 Query: 181 SK--RAKQPTF 207 + A+ P F Sbjct: 202 ERMLAAQNPLF 212 >U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-binding protein protein. Length = 646 Score = 45.2 bits (102), Expect = 1e-05 Identities = 23/56 (41%), Positives = 31/56 (55%) Frame = +1 Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171 RD T S GYA+V+F + ADAE A+ MN + L + +R WS R P + G Sbjct: 65 RDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG 120 Score = 32.7 bits (71), Expect = 0.066 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRT-NWSTRKPPAKGVNEGAPSSKRAKQP 201 SKGY FV F + A+ AIQ +NG L + + + R + + E A Sbjct: 159 SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVK 218 Query: 202 TFDEVYNQSS 231 F + YN+ + Sbjct: 219 NFGDHYNKET 228 Score = 31.5 bits (68), Expect = 0.15 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +1 Query: 22 KSKGYAFVSFVKKADAEAAIQAMN 93 KSKG+ FV+F +AE A+QA++ Sbjct: 250 KSKGFGFVAFANPEEAETAVQALH 273 >AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical protein Y106G6H.2c protein. Length = 586 Score = 45.2 bits (102), Expect = 1e-05 Identities = 23/56 (41%), Positives = 31/56 (55%) Frame = +1 Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171 RD T S GYA+V+F + ADAE A+ MN + L + +R WS R P + G Sbjct: 65 RDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG 120 Score = 31.5 bits (68), Expect = 0.15 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +1 Query: 22 KSKGYAFVSFVKKADAEAAIQAMN 93 KSKG+ FV+F +AE A+QA++ Sbjct: 190 KSKGFGFVAFANPEEAETAVQALH 213 >AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical protein Y106G6H.2a protein. Length = 646 Score = 45.2 bits (102), Expect = 1e-05 Identities = 23/56 (41%), Positives = 31/56 (55%) Frame = +1 Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171 RD T S GYA+V+F + ADAE A+ MN + L + +R WS R P + G Sbjct: 65 RDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG 120 Score = 32.7 bits (71), Expect = 0.066 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRT-NWSTRKPPAKGVNEGAPSSKRAKQP 201 SKGY FV F + A+ AIQ +NG L + + + R + + E A Sbjct: 159 SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVK 218 Query: 202 TFDEVYNQSS 231 F + YN+ + Sbjct: 219 NFGDHYNKET 228 Score = 31.5 bits (68), Expect = 0.15 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +1 Query: 22 KSKGYAFVSFVKKADAEAAIQAMN 93 KSKG+ FV+F +AE A+QA++ Sbjct: 250 KSKGFGFVAFANPEEAETAVQALH 273 >AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily assigned gene nameprotein 262 protein. Length = 302 Score = 42.7 bits (96), Expect = 6e-05 Identities = 21/48 (43%), Positives = 31/48 (64%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144 VR+ +T KSKGY FVSF D A++ M+G+++G+R I+ S K Sbjct: 235 VRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWK 282 >Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical protein R06C1.4 protein. Length = 84 Score = 40.3 bits (90), Expect = 3e-04 Identities = 16/47 (34%), Positives = 31/47 (65%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 141 V D +T + +G+AFV F ++A A+ A++ +NG R++R N++ + Sbjct: 38 VYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYANK 84 >U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (splicing factor) protein4, isoform a protein. Length = 196 Score = 39.9 bits (89), Expect = 4e-04 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Frame = +1 Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA--KGVNEGAP 177 RD + +SKG+ FV F ++ DAE A+ +G+ + R +R + P+ +G G Sbjct: 52 RDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGRGGGG 111 Query: 178 SSKRAKQP 201 +R++ P Sbjct: 112 GRRRSRSP 119 >Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical protein F35H8.5 protein. Length = 456 Score = 38.7 bits (86), Expect = 0.001 Identities = 17/45 (37%), Positives = 31/45 (68%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135 VRD T +S GY FV++V++ DA A+ + NG L +++I+ +++ Sbjct: 74 VRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYA 118 Score = 31.5 bits (68), Expect = 0.15 Identities = 22/64 (34%), Positives = 28/64 (43%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 186 D T SKG FV F KK +A+ AI+ +NG S + PA +G S Sbjct: 162 DNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVKFANNPASNNPKGLLSDL 221 Query: 187 RAKQ 198 A Q Sbjct: 222 EAVQ 225 Score = 29.9 bits (64), Expect = 0.46 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = +1 Query: 16 TLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKP 147 T + KGYAFVS +A A+ ++NG L ++++ + + P Sbjct: 410 TQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQVVFKSSTP 453 >Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical protein R09B3.2 protein. Length = 83 Score = 38.3 bits (85), Expect = 0.001 Identities = 15/47 (31%), Positives = 28/47 (59%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 141 V D +T + +G+AF+ F ++ A+ A++ MNG R +R N + + Sbjct: 37 VCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLANK 83 >Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical protein F56A8.6 protein. Length = 336 Score = 37.9 bits (84), Expect = 0.002 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVN-EGAP 177 V D +T K KGY F+ F AE AI+ +NG L R +R + A G+N E Sbjct: 50 VHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD-----SAAGGMNMEEFG 104 Query: 178 SSKRAKQPTFDEVY 219 SS A P + Y Sbjct: 105 SSSNAPAPVEENPY 118 >U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (splicing factor) protein4, isoform b protein. Length = 126 Score = 37.1 bits (82), Expect = 0.003 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Frame = +1 Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA--KGVNEGAP 177 RD + +SKG+ FV F ++ DAE A+ +G+ + R +R + P+ +G G Sbjct: 52 RDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGRGGGG 111 Query: 178 SSKR-AKQPTFDEV 216 +R A +P E+ Sbjct: 112 GRRRTAAEPDVAEL 125 >Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical protein R09B3.3 protein. Length = 85 Score = 36.3 bits (80), Expect = 0.005 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129 V D +T + +G+AFV F ++A A+ A+ NG R++R N Sbjct: 36 VCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVN 78 >Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical protein R05H10.2 protein. Length = 608 Score = 35.9 bits (79), Expect = 0.007 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = +1 Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144 +DP+T G+ F+ FV+KADAE + N + RS+ +W+ K Sbjct: 131 KDPKTCA--GFGFIQFVEKADAEKGREFFNTNKVLGRSVAADWALDK 175 >Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical protein W02B12.3c protein. Length = 150 Score = 35.5 bits (78), Expect = 0.009 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171 +RD L G+ FV F K DAE A+ +NG+ LG + ++S KP G + G Sbjct: 29 IRD--VLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS--KPRGGGGDRG 81 >Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical protein W02B12.3b protein. Length = 148 Score = 35.5 bits (78), Expect = 0.009 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171 +RD L G+ FV F K DAE A+ +NG+ LG + ++S KP G + G Sbjct: 29 IRD--VLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS--KPRGGGGDRG 81 >Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical protein W02B12.3a protein. Length = 312 Score = 35.5 bits (78), Expect = 0.009 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171 +RD L G+ FV F K DAE A+ +NG+ LG + ++S KP G + G Sbjct: 29 IRD--VLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS--KPRGGGGDRG 81 >U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on x protein 1 protein. Length = 415 Score = 35.5 bits (78), Expect = 0.009 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGV 162 SKG+ FV+ + DAE A Q ++G + R I N +T + +K V Sbjct: 191 SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATARVHSKKV 236 >U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein protein. Length = 415 Score = 35.5 bits (78), Expect = 0.009 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGV 162 SKG+ FV+ + DAE A Q ++G + R I N +T + +K V Sbjct: 191 SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATARVHSKKV 236 >AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna binding domain) containingprotein 6, isoform c protein. Length = 346 Score = 35.1 bits (77), Expect = 0.012 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129 DP T K +AFV + A A ++MNGQ LG R+++ N Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVN 176 >AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna binding domain) containingprotein 6, isoform a protein. Length = 339 Score = 35.1 bits (77), Expect = 0.012 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129 DP T K +AFV + A A ++MNGQ LG R+++ N Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVN 176 >AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna binding domain) containingprotein 6, isoform b protein. Length = 749 Score = 35.1 bits (77), Expect = 0.012 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129 DP T K +AFV + A A ++MNGQ LG R+++ N Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVN 176 >AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical protein ZK616.1 protein. Length = 491 Score = 35.1 bits (77), Expect = 0.012 Identities = 18/58 (31%), Positives = 30/58 (51%) Frame = +1 Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPT 204 GY FV F +A+A+ I M+G+ L + I +W+ +P G P S+ + P+ Sbjct: 131 GYGFVLFDTRANAQKKIVEMDGKTLNGKLISVSWA--RPDTVGRKRKRPMSEESPTPS 186 >AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical protein F58D5.1 protein. Length = 611 Score = 33.5 bits (73), Expect = 0.038 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGS-RSIRTNWS 135 DP + S+GYAFV++ K DA AA + +G + + + ++ N S Sbjct: 234 DPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNVS 277 Score = 27.1 bits (57), Expect = 3.3 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +1 Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 150 K K YAF+ F ++ D A++ NG+ L + S KPP Sbjct: 408 KVKDYAFIHFNERDDCLKAMEEWNGKELEGTVVEA--SLAKPP 448 >Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical protein W02B12.2 protein. Length = 281 Score = 32.7 bits (71), Expect = 0.066 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = +1 Query: 19 LKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVN-EGAPSSKRAK 195 + G+ FV F + DA+ A+ +NG+ L + + RK G N E + S R + Sbjct: 32 IMKNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRK---VGYNEERSGSGFRGR 88 Query: 196 QPTF 207 +PTF Sbjct: 89 EPTF 92 >AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical protein Y106G6H.2b protein. Length = 583 Score = 32.7 bits (71), Expect = 0.066 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRT-NWSTRKPPAKGVNEGAPSSKRAKQP 201 SKGY FV F + A+ AIQ +NG L + + + R + + E A Sbjct: 96 SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVK 155 Query: 202 TFDEVYNQSS 231 F + YN+ + Sbjct: 156 NFGDHYNKET 165 Score = 31.5 bits (68), Expect = 0.15 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +1 Query: 22 KSKGYAFVSFVKKADAEAAIQAMN 93 KSKG+ FV+F +AE A+QA++ Sbjct: 187 KSKGFGFVAFANPEEAETAVQALH 210 Score = 29.1 bits (62), Expect = 0.81 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 61 ADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171 ADAE A+ MN + L + +R WS R P + G Sbjct: 21 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG 57 >U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical protein C30B5.4 protein. Length = 302 Score = 32.3 bits (70), Expect = 0.087 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129 +RD T KSKG+AF+ + + A+ NG L R IR + Sbjct: 70 IRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVD 112 >D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein protein. Length = 346 Score = 32.3 bits (70), Expect = 0.087 Identities = 12/28 (42%), Positives = 21/28 (75%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQ 84 +RDP T +S+G+ FV+F K + +AA++ Sbjct: 55 MRDPTTKRSRGFGFVTFSGKTEVDAAMK 82 >AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical protein H28G03.1b protein. Length = 315 Score = 32.3 bits (70), Expect = 0.087 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAI----QAMNGQWLGS-RSI-RTNWSTRKPPAKGV 162 +RDP T S+G+ FV+F AE+A+ + G+ + S R+I R S+ PP Sbjct: 81 IRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPREQMSSMIPPPFFE 140 Query: 163 NEGAPSSK 186 + AP K Sbjct: 141 TDPAPGCK 148 >AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical protein H28G03.1c protein. Length = 335 Score = 32.3 bits (70), Expect = 0.087 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAI----QAMNGQWLGS-RSI-RTNWSTRKPPAKGV 162 +RDP T S+G+ FV+F AE+A+ + G+ + S R+I R S+ PP Sbjct: 101 IRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPREQMSSMIPPPFFE 160 Query: 163 NEGAPSSK 186 + AP K Sbjct: 161 TDPAPGCK 168 >AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical protein H28G03.1a protein. Length = 336 Score = 32.3 bits (70), Expect = 0.087 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAI----QAMNGQWLGS-RSI-RTNWSTRKPPAKGV 162 +RDP T S+G+ FV+F AE+A+ + G+ + S R+I R S+ PP Sbjct: 102 IRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPREQMSSMIPPPFFE 161 Query: 163 NEGAPSSK 186 + AP K Sbjct: 162 TDPAPGCK 169 >AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1 homolog protein1, isoform b protein. Length = 309 Score = 32.3 bits (70), Expect = 0.087 Identities = 12/28 (42%), Positives = 21/28 (75%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQ 84 +RDP T +S+G+ FV+F K + +AA++ Sbjct: 17 MRDPTTKRSRGFGFVTFSGKTEVDAAMK 44 >AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1 homolog protein1, isoform c protein. Length = 308 Score = 32.3 bits (70), Expect = 0.087 Identities = 12/28 (42%), Positives = 21/28 (75%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQ 84 +RDP T +S+G+ FV+F K + +AA++ Sbjct: 17 MRDPTTKRSRGFGFVTFSGKTEVDAAMK 44 >AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1 homolog protein1, isoform d protein. Length = 347 Score = 32.3 bits (70), Expect = 0.087 Identities = 12/28 (42%), Positives = 21/28 (75%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQ 84 +RDP T +S+G+ FV+F K + +AA++ Sbjct: 55 MRDPTTKRSRGFGFVTFSGKTEVDAAMK 82 >AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1 homolog protein1, isoform a protein. Length = 346 Score = 32.3 bits (70), Expect = 0.087 Identities = 12/28 (42%), Positives = 21/28 (75%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQ 84 +RDP T +S+G+ FV+F K + +AA++ Sbjct: 55 MRDPTTKRSRGFGFVTFSGKTEVDAAMK 82 >Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical protein T12D8.2 protein. Length = 207 Score = 31.9 bits (69), Expect = 0.11 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129 V D + KG+A+V+F + AI +NG G+R ++ N Sbjct: 44 VHDRDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVN 86 >Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical protein T04A8.6 protein. Length = 307 Score = 31.9 bits (69), Expect = 0.11 Identities = 15/31 (48%), Positives = 21/31 (67%) Frame = +1 Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 96 R+ +T KG+A+V F KA AE A ++MNG Sbjct: 65 RNRRTGNHKGWAYVGFDNKAVAEIAAESMNG 95 >Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical protein F26A3.2 protein. Length = 154 Score = 31.1 bits (67), Expect = 0.20 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +1 Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW 132 G+ FV + + DAE A+Q ++ + R IR +W Sbjct: 79 GFCFVEYYTREDAELALQNISNTRMDDRVIRADW 112 >U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna binding protein familyprotein 1, isoform b protein. Length = 420 Score = 31.1 bits (67), Expect = 0.20 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123 D T SK + FVS+ A AI AMNG +GS+ ++ Sbjct: 369 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK 407 >U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna binding protein familyprotein 1, isoform a protein. Length = 584 Score = 31.1 bits (67), Expect = 0.20 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123 D T SK + FVS+ A AI AMNG +GS+ ++ Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK 571 Score = 25.8 bits (54), Expect = 7.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93 +RD T SKG FV+F + DA A A++ Sbjct: 87 LRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117 >U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribonucleoprotein protein. Length = 584 Score = 31.1 bits (67), Expect = 0.20 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123 D T SK + FVS+ A AI AMNG +GS+ ++ Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK 571 Score = 25.8 bits (54), Expect = 7.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93 +RD T SKG FV+F + DA A A++ Sbjct: 87 LRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117 >EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA binding protein variantE protein. Length = 513 Score = 31.1 bits (67), Expect = 0.20 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123 D T SK + FVS+ A AI AMNG +GS+ ++ Sbjct: 462 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK 500 Score = 25.8 bits (54), Expect = 7.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93 +RD T SKG FV+F + DA A A++ Sbjct: 87 LRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117 >EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA binding protein variantA protein. Length = 584 Score = 31.1 bits (67), Expect = 0.20 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123 D T SK + FVS+ A AI AMNG +GS+ ++ Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK 571 Score = 25.8 bits (54), Expect = 7.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93 +RD T SKG FV+F + DA A A++ Sbjct: 87 LRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117 >Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical protein C17D12.2 protein. Length = 514 Score = 30.7 bits (66), Expect = 0.26 Identities = 15/39 (38%), Positives = 24/39 (61%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123 D T +SK + FVS+ ++AAI AMNG +G + ++ Sbjct: 463 DRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLK 501 Score = 25.8 bits (54), Expect = 7.5 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNG 96 SKG AFV + DA AI A++G Sbjct: 163 SKGCAFVKYKHGLDAHMAISALHG 186 >AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-binding protein protein. Length = 514 Score = 30.7 bits (66), Expect = 0.26 Identities = 15/39 (38%), Positives = 24/39 (61%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123 D T +SK + FVS+ ++AAI AMNG +G + ++ Sbjct: 463 DRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLK 501 Score = 25.8 bits (54), Expect = 7.5 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNG 96 SKG AFV + DA AI A++G Sbjct: 163 SKGCAFVKYKHGLDAHMAISALHG 186 >Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical protein F22B5.2 protein. Length = 256 Score = 30.3 bits (65), Expect = 0.35 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +1 Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135 RD T KG+AFV+F + DA AI +N + ++ W+ Sbjct: 209 RDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKVEWT 252 >U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor U2AF65 protein. Length = 496 Score = 29.9 bits (64), Expect = 0.46 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120 SKGYAF ++ + AI +NG LG + + Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQL 361 >AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing factor protein 1,isoform a protein. Length = 496 Score = 29.9 bits (64), Expect = 0.46 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120 SKGYAF ++ + AI +NG LG + + Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQL 361 >AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing factor protein 1,isoform d protein. Length = 471 Score = 29.9 bits (64), Expect = 0.46 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120 SKGYAF ++ + AI +NG LG + + Sbjct: 305 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQL 336 >AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing factor protein 1,isoform c protein. Length = 474 Score = 29.9 bits (64), Expect = 0.46 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120 SKGYAF ++ + AI +NG LG + + Sbjct: 308 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQL 339 >Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical protein R74.5b protein. Length = 286 Score = 29.5 bits (63), Expect = 0.61 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144 SKG+ FV+ DA+ A NG + R + N +T++ Sbjct: 20 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 59 >Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical protein R74.5a protein. Length = 404 Score = 29.5 bits (63), Expect = 0.61 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144 SKG+ FV+ DA+ A NG + R + N +T++ Sbjct: 138 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 177 >DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding protein ASD-1 protein. Length = 404 Score = 29.5 bits (63), Expect = 0.61 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +1 Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144 SKG+ FV+ DA+ A NG + R + N +T++ Sbjct: 138 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 177 >AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. Length = 258 Score = 29.1 bits (62), Expect = 0.81 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 186 D ++ + +AFV F DAE A++A +G R IR ++ +GV PS + Sbjct: 39 DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT------RGVGPRGPSGR 92 >AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical protein Y111B2A.18 protein. Length = 258 Score = 28.7 bits (61), Expect = 1.1 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135 D ++ + +AFV F DAE A++A +G R IR ++ Sbjct: 39 DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81 >AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor protein 12 protein. Length = 248 Score = 28.7 bits (61), Expect = 1.1 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93 + D T KS+GY FV+ +A AE A + N Sbjct: 67 ITDRNTQKSRGYGFVTMKDRASAERACKDPN 97 >AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical protein Y116A8C.35 protein. Length = 285 Score = 28.3 bits (60), Expect = 1.4 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +1 Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120 G +V F+K+ DAE A +N +W + I Sbjct: 120 GNVYVKFMKEEDAEKAKNDLNNRWFNGQPI 149 >AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical protein F40G9.12 protein. Length = 230 Score = 28.3 bits (60), Expect = 1.4 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +3 Query: 30 GLCFCIICKESRCRSCHPGNE 92 G C CKE C++C P NE Sbjct: 111 GKSVCEDCKEHECKACEPPNE 131 >Z74031-6|CAB54239.1| 227|Caenorhabditis elegans Hypothetical protein F32D8.5b protein. Length = 227 Score = 27.9 bits (59), Expect = 1.9 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -1 Query: 205 MLAVLLSYYWARLHSHPSLVVYALTSSYVWILIPAT 98 M+ VL SY W PS++++A+ ++ +L+ T Sbjct: 92 MVPVLSSYLWEAAAERPSMMMFAIVANTFLVLLSFT 127 >Z74031-5|CAA98457.1| 225|Caenorhabditis elegans Hypothetical protein F32D8.5a protein. Length = 225 Score = 27.9 bits (59), Expect = 1.9 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -1 Query: 205 MLAVLLSYYWARLHSHPSLVVYALTSSYVWILIPAT 98 M+ VL SY W PS++++A+ ++ +L+ T Sbjct: 90 MVPVLSSYLWEAAAERPSMMMFAIVANTFLVLLSFT 125 >Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical protein F11A10.7 protein. Length = 394 Score = 27.9 bits (59), Expect = 1.9 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAI 81 VRD T K KG+AFV+F + + A+ Sbjct: 279 VRDKDTGKGKGFAFVNFKQDSSVSLAL 305 >Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical protein F39H2.2a protein. Length = 427 Score = 25.0 bits (52), Expect(2) = 2.3 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135 VRD ++ S YAF+ F E A M+ + R I ++S Sbjct: 273 VRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 317 Score = 21.0 bits (42), Expect(2) = 2.3 Identities = 7/22 (31%), Positives = 14/22 (63%) Frame = +1 Query: 139 RKPPAKGVNEGAPSSKRAKQPT 204 R+P K ++ +PS +R + P+ Sbjct: 344 RRPEVKRSHQRSPSPRRRRSPS 365 >Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical protein F39H2.2a protein. Length = 427 Score = 25.0 bits (52), Expect(2) = 2.3 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135 VRD ++ S YAF+ F E A M+ + R I ++S Sbjct: 273 VRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 317 Score = 21.0 bits (42), Expect(2) = 2.3 Identities = 7/22 (31%), Positives = 14/22 (63%) Frame = +1 Query: 139 RKPPAKGVNEGAPSSKRAKQPT 204 R+P K ++ +PS +R + P+ Sbjct: 344 RRPEVKRSHQRSPSPRRRRSPS 365 >Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical protein F39H2.2b protein. Length = 358 Score = 25.0 bits (52), Expect(2) = 2.4 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135 VRD ++ S YAF+ F E A M+ + R I ++S Sbjct: 204 VRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 248 Score = 21.0 bits (42), Expect(2) = 2.4 Identities = 7/22 (31%), Positives = 14/22 (63%) Frame = +1 Query: 139 RKPPAKGVNEGAPSSKRAKQPT 204 R+P K ++ +PS +R + P+ Sbjct: 275 RRPEVKRSHQRSPSPRRRRSPS 296 >Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical protein F58B3.7 protein. Length = 371 Score = 27.5 bits (58), Expect = 2.5 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +1 Query: 40 FVSFVKKADAEAAIQAMNGQWLGSRSI 120 FV F A A A MNG++ G RS+ Sbjct: 330 FVEFTNNAQAIKAFVMMNGRFFGGRSV 356 >U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (splicing factor) protein5, isoform b protein. Length = 166 Score = 27.5 bits (58), Expect = 2.5 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = +1 Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIR--TNWSTRKPPAKGVNEGAPSSKRAKQP 201 G+AFV F DAE A ++G+ + S+R + KP + +R++ P Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSP 94 >U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (splicing factor) protein5, isoform d protein. Length = 208 Score = 27.5 bits (58), Expect = 2.5 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = +1 Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIR--TNWSTRKPPAKGVNEGAPSSKRAKQP 201 G+AFV F DAE A ++G+ + S+R + KP + +R++ P Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSP 94 >U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (splicing factor) protein5, isoform a protein. Length = 208 Score = 27.5 bits (58), Expect = 2.5 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = +1 Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIR--TNWSTRKPPAKGVNEGAPSSKRAKQP 201 G+AFV F DAE A ++G+ + S+R + KP + +R++ P Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSP 94 >U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna binding domain) containingprotein 5 protein. Length = 289 Score = 27.5 bits (58), Expect = 2.5 Identities = 12/58 (20%), Positives = 26/58 (44%) Frame = +1 Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 201 +GY +V + DAE +I+ M+G + ++ + + +P +R+ P Sbjct: 175 RGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMTIGRQSVPFQRRSSPFRRRSPPP 232 >Z81473-1|CAB03897.1| 302|Caenorhabditis elegans Hypothetical protein C17D12.1a protein. Length = 302 Score = 27.1 bits (57), Expect = 3.3 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -1 Query: 151 LVVYALTSSYVWILIPATGHSLPGWQLRH 65 L+ YA +W+L+P GHS+ W + H Sbjct: 18 LIAYADYVILIWLLLPTFGHSI--WTVFH 44 >Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein K04G2.8b protein. Length = 1188 Score = 27.1 bits (57), Expect = 3.3 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +1 Query: 91 NGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 201 NG + +I T ++ +KPP G N G S++++ P Sbjct: 1142 NGSPIAKSAIVTPYNYQKPPFTGRNNGEMSNEKSVTP 1178 >Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein K04G2.8a protein. Length = 1186 Score = 27.1 bits (57), Expect = 3.3 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +1 Query: 91 NGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 201 NG + +I T ++ +KPP G N G S++++ P Sbjct: 1140 NGSPIAKSAIVTPYNYQKPPFTGRNNGEMSNEKSVTP 1176 >Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical protein R07E5.14 protein. Length = 142 Score = 27.1 bits (57), Expect = 3.3 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +1 Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW 132 D +T KGYA V + + +A AI N L ++++ +W Sbjct: 89 DRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKVDW 130 >U41994-3|AAO91712.1| 251|Caenorhabditis elegans Rnase h protein 1.0, isoform c protein. Length = 251 Score = 27.1 bits (57), Expect = 3.3 Identities = 21/77 (27%), Positives = 31/77 (40%) Frame = +1 Query: 40 FVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVY 219 F F +A+A + A N GS+ + ST K +EG ++ K T +EV Sbjct: 37 FKKFATEAEARKFV-ADNMSVPGSKPVTPAVSTSSATRKRTHEGTKFTEAKKMKTEEEVI 95 Query: 220 NQSSPTNTTVYCGGFLS 270 + VY G S Sbjct: 96 DPEFANAPVVYTDGACS 112 >U40797-8|AAL08029.1| 332|Caenorhabditis elegans Serpentine receptor, class u protein7 protein. Length = 332 Score = 27.1 bits (57), Expect = 3.3 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -1 Query: 238 LSVSFDYKLRQMLAVLLSYYWARLHSHPSLVVYALTSSY 122 LS FDY + A + W +H +L+++ LTS + Sbjct: 77 LSFFFDYMSNRFPATGMMTSWCASSNHETLLIFILTSHF 115 >AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. Length = 1186 Score = 27.1 bits (57), Expect = 3.3 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +1 Query: 91 NGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 201 NG + +I T ++ +KPP G N G S++++ P Sbjct: 1140 NGSPIAKSAIVTPYNYQKPPFTGRNNGEMSNEKSVTP 1176 >Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical protein F11A10.1c protein. Length = 1242 Score = 26.6 bits (56), Expect = 4.3 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +2 Query: 80 SRQ*MASGWDQDPYVRTGQRVNHQR 154 SR+ + G D + Y R+G+++NH R Sbjct: 40 SRRRSSGGVDGNGYTRSGRKINHNR 64 >Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical protein F11A10.1b protein. Length = 1289 Score = 26.6 bits (56), Expect = 4.3 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +2 Query: 80 SRQ*MASGWDQDPYVRTGQRVNHQR 154 SR+ + G D + Y R+G+++NH R Sbjct: 40 SRRRSSGGVDGNGYTRSGRKINHNR 64 >Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical protein F11A10.1a protein. Length = 1291 Score = 26.6 bits (56), Expect = 4.3 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +2 Query: 80 SRQ*MASGWDQDPYVRTGQRVNHQR 154 SR+ + G D + Y R+G+++NH R Sbjct: 40 SRRRSSGGVDGNGYTRSGRKINHNR 64 >Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical protein F11A10.1c protein. Length = 1242 Score = 26.6 bits (56), Expect = 4.3 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +2 Query: 80 SRQ*MASGWDQDPYVRTGQRVNHQR 154 SR+ + G D + Y R+G+++NH R Sbjct: 40 SRRRSSGGVDGNGYTRSGRKINHNR 64 >Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical protein F11A10.1b protein. Length = 1289 Score = 26.6 bits (56), Expect = 4.3 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +2 Query: 80 SRQ*MASGWDQDPYVRTGQRVNHQR 154 SR+ + G D + Y R+G+++NH R Sbjct: 40 SRRRSSGGVDGNGYTRSGRKINHNR 64 >Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical protein F11A10.1a protein. Length = 1291 Score = 26.6 bits (56), Expect = 4.3 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +2 Query: 80 SRQ*MASGWDQDPYVRTGQRVNHQR 154 SR+ + G D + Y R+G+++NH R Sbjct: 40 SRRRSSGGVDGNGYTRSGRKINHNR 64 >U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (splicing factor) protein6, isoform c protein. Length = 118 Score = 26.6 bits (56), Expect = 4.3 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST 138 G+AFV + DAE A++A++G + R ST Sbjct: 40 GFAFVEYDDVRDAEDAVRALDGSRICGVRARVELST 75 >U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (splicing factor) protein6, isoform b protein. Length = 153 Score = 26.6 bits (56), Expect = 4.3 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST 138 G+AFV + DAE A++A++G + R ST Sbjct: 40 GFAFVEYDDVRDAEDAVRALDGSRICGVRARVELST 75 >U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (splicing factor) protein6, isoform a protein. Length = 179 Score = 26.6 bits (56), Expect = 4.3 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST 138 G+AFV + DAE A++A++G + R ST Sbjct: 40 GFAFVEYDDVRDAEDAVRALDGSRICGVRARVELST 75 >DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expression abnormal protein protein. Length = 1291 Score = 26.6 bits (56), Expect = 4.3 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +2 Query: 80 SRQ*MASGWDQDPYVRTGQRVNHQR 154 SR+ + G D + Y R+G+++NH R Sbjct: 40 SRRRSSGGVDGNGYTRSGRKINHNR 64 >Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical protein C25A1.4 protein. Length = 454 Score = 26.2 bits (55), Expect = 5.7 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +1 Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120 KSKG + + +A A+ +NGQ L R++ Sbjct: 226 KSKGVCVIQYTHPIEAVQAVSMLNGQRLFDRNL 258 >Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical protein T07F10.3 protein. Length = 371 Score = 26.2 bits (55), Expect = 5.7 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = +1 Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWL-GSRSIRTN 129 KGY F+ F+ +A + +NG + G + IR N Sbjct: 108 KGYCFIEFITFDEARQTLYDLNGNRIPGFKDIRFN 142 >Z48241-8|CAD44101.1| 589|Caenorhabditis elegans Hypothetical protein C48D5.2c protein. Length = 589 Score = 26.2 bits (55), Expect = 5.7 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +1 Query: 172 APSSKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270 A ++ R PT + YN SSP N+ F S Sbjct: 118 AKAAARGLPPTNQQAYNTSSPRNSVASYSSFAS 150 >Z48241-7|CAA88287.1| 1026|Caenorhabditis elegans Hypothetical protein C48D5.2a protein. Length = 1026 Score = 26.2 bits (55), Expect = 5.7 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +1 Query: 172 APSSKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270 A ++ R PT + YN SSP N+ F S Sbjct: 555 AKAAARGLPPTNQQAYNTSSPRNSVASYSSFAS 587 >Z48241-2|CAB54194.1| 624|Caenorhabditis elegans Hypothetical protein C48D5.2b protein. Length = 624 Score = 26.2 bits (55), Expect = 5.7 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +1 Query: 172 APSSKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270 A ++ R PT + YN SSP N+ F S Sbjct: 153 AKAAARGLPPTNQQAYNTSSPRNSVASYSSFAS 185 >Z36237-4|CAD44107.1| 589|Caenorhabditis elegans Hypothetical protein C48D5.2c protein. Length = 589 Score = 26.2 bits (55), Expect = 5.7 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +1 Query: 172 APSSKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270 A ++ R PT + YN SSP N+ F S Sbjct: 118 AKAAARGLPPTNQQAYNTSSPRNSVASYSSFAS 150 >Z36237-3|CAA85272.1| 1026|Caenorhabditis elegans Hypothetical protein C48D5.2a protein. Length = 1026 Score = 26.2 bits (55), Expect = 5.7 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +1 Query: 172 APSSKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270 A ++ R PT + YN SSP N+ F S Sbjct: 555 AKAAARGLPPTNQQAYNTSSPRNSVASYSSFAS 587 >U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna binding domain) containingprotein 2 protein. Length = 206 Score = 26.2 bits (55), Expect = 5.7 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +1 Query: 13 QTLKSKGYAFVSFVKKADAEAAIQAMNG 96 +TLK +G A V F + A AA +A+NG Sbjct: 45 RTLKMRGQAHVIFKELPAASAAREALNG 72 >Z73105-1|CAA97442.2| 525|Caenorhabditis elegans Hypothetical protein R13.3 protein. Length = 525 Score = 25.8 bits (54), Expect = 7.5 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = -1 Query: 217 KLRQMLAVLLSYYWARLH-SHPSLVVYALTSSYVWILIPATGHSLPG 80 + R+MLA+L +Y W + ++P +V A+ S + LI L G Sbjct: 219 EFRKMLALLSNYDWVPIPLAYPQVVFLAVRSYFFMALIARQSVLLDG 265 >Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical protein T14G8.1 protein. Length = 1787 Score = 25.8 bits (54), Expect = 7.5 Identities = 12/41 (29%), Positives = 19/41 (46%) Frame = +1 Query: 109 SRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSS 231 S+ + T +KPP K G SSK+ + + Y +S Sbjct: 44 SQGVPTTSEKKKPPPKKKKGGKKSSKKKNNCDYPDPYKSTS 84 >Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical protein T14G8.1 protein. Length = 1787 Score = 25.8 bits (54), Expect = 7.5 Identities = 12/41 (29%), Positives = 19/41 (46%) Frame = +1 Query: 109 SRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSS 231 S+ + T +KPP K G SSK+ + + Y +S Sbjct: 44 SQGVPTTSEKKKPPPKKKKGGKKSSKKKNNCDYPDPYKSTS 84 >EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA binding protein variantD protein. Length = 327 Score = 25.8 bits (54), Expect = 7.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93 +RD T SKG FV+F + DA A A++ Sbjct: 87 LRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117 >EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA binding protein variantC protein. Length = 378 Score = 25.8 bits (54), Expect = 7.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93 +RD T SKG FV+F + DA A A++ Sbjct: 87 LRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117 >EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA binding protein variantB protein. Length = 193 Score = 25.8 bits (54), Expect = 7.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93 +RD T SKG FV+F + DA A A++ Sbjct: 87 LRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117 >AY515708-1|AAR99658.1| 525|Caenorhabditis elegans bestrophin 1 protein. Length = 525 Score = 25.8 bits (54), Expect = 7.5 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = -1 Query: 217 KLRQMLAVLLSYYWARLH-SHPSLVVYALTSSYVWILIPATGHSLPG 80 + R+MLA+L +Y W + ++P +V A+ S + LI L G Sbjct: 219 EFRKMLALLSNYDWVPIPLAYPQVVFLAVRSYFFMALIARQSVLLDG 265 >AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. Length = 1787 Score = 25.8 bits (54), Expect = 7.5 Identities = 12/41 (29%), Positives = 19/41 (46%) Frame = +1 Query: 109 SRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSS 231 S+ + T +KPP K G SSK+ + + Y +S Sbjct: 44 SQGVPTTSEKKKPPPKKKKGGKKSSKKKNNCDYPDPYKSTS 84 >U50311-1|AAA92307.1| 492|Caenorhabditis elegans Hypothetical protein C25E10.5 protein. Length = 492 Score = 25.4 bits (53), Expect = 10.0 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -2 Query: 237 CR*ALIINFVKCWLFCSLTTGRAFIHTLRWWFTR*PVRTY 118 CR I+ K +L C++ +G F+ T + F+ PV Y Sbjct: 333 CRLGQILPQQKVFLVCTIASGCVFLITYPYEFSSKPVVLY 372 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.130 0.396 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,797,883 Number of Sequences: 27780 Number of extensions: 131461 Number of successful extensions: 587 Number of sequences better than 10.0: 111 Number of HSP's better than 10.0 without gapping: 543 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 581 length of database: 12,740,198 effective HSP length: 72 effective length of database: 10,740,038 effective search space used: 408121444 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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