Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0296
(334 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 99 9e-22
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 99 9e-22
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 99 9e-22
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 99 9e-22
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 89 5e-19
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 82 1e-16
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 48 2e-06
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 48 2e-06
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 45 1e-05
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 45 1e-05
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 45 1e-05
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 45 1e-05
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 45 1e-05
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 43 6e-05
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 40 3e-04
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 40 4e-04
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 39 0.001
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 38 0.001
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 38 0.002
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 37 0.003
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 36 0.005
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 36 0.007
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 36 0.009
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 36 0.009
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 36 0.009
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 36 0.009
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 36 0.009
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 35 0.012
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 35 0.012
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 35 0.012
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 35 0.012
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 33 0.038
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 33 0.066
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 33 0.066
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 32 0.087
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 32 0.087
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 32 0.087
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 32 0.087
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 32 0.087
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 32 0.087
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 32 0.087
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 32 0.087
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 32 0.087
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 32 0.11
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 32 0.11
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 31 0.20
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 31 0.20
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 31 0.20
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 31 0.20
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 31 0.20
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 31 0.20
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 0.26
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 0.26
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 30 0.35
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 30 0.46
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 30 0.46
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 30 0.46
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 30 0.46
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 29 0.61
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 29 0.61
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 29 0.61
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 29 0.81
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 29 1.1
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 29 1.1
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 28 1.4
AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical ... 28 1.4
Z74031-6|CAB54239.1| 227|Caenorhabditis elegans Hypothetical pr... 28 1.9
Z74031-5|CAA98457.1| 225|Caenorhabditis elegans Hypothetical pr... 28 1.9
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 28 1.9
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 25 2.3
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 25 2.3
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 25 2.4
Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical pr... 27 2.5
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 27 2.5
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 27 2.5
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 27 2.5
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 27 2.5
Z81473-1|CAB03897.1| 302|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 27 3.3
U41994-3|AAO91712.1| 251|Caenorhabditis elegans Rnase h protein... 27 3.3
U40797-8|AAL08029.1| 332|Caenorhabditis elegans Serpentine rece... 27 3.3
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. 27 3.3
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 27 4.3
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 27 4.3
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 27 4.3
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 27 4.3
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 27 4.3
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 27 4.3
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 27 4.3
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 27 4.3
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 26 5.7
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 26 5.7
Z48241-8|CAD44101.1| 589|Caenorhabditis elegans Hypothetical pr... 26 5.7
Z48241-7|CAA88287.1| 1026|Caenorhabditis elegans Hypothetical pr... 26 5.7
Z48241-2|CAB54194.1| 624|Caenorhabditis elegans Hypothetical pr... 26 5.7
Z36237-4|CAD44107.1| 589|Caenorhabditis elegans Hypothetical pr... 26 5.7
Z36237-3|CAA85272.1| 1026|Caenorhabditis elegans Hypothetical pr... 26 5.7
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 26 5.7
Z73105-1|CAA97442.2| 525|Caenorhabditis elegans Hypothetical pr... 26 7.5
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 26 7.5
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 26 7.5
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 26 7.5
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 26 7.5
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 26 7.5
AY515708-1|AAR99658.1| 525|Caenorhabditis elegans bestrophin 1 ... 26 7.5
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 26 7.5
U50311-1|AAA92307.1| 492|Caenorhabditis elegans Hypothetical pr... 25 10.0
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 98.7 bits (235), Expect = 9e-22
Identities = 48/90 (53%), Positives = 62/90 (68%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
+RD T KSKGY FVS+ K+ +AE AI+ MNGQWLG R+IRTNW+TRKP ++ PS
Sbjct: 54 IRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG----DQEKPS 109
Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270
K ++DE+YNQ+S NT+VY G S
Sbjct: 110 HYNEK--SYDEIYNQTSGDNTSVYVGNIAS 137
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW----STRKPP--AKGV 162
+ + + K +GYAFV F K A AI MN Q +G + +R +W T K P + G
Sbjct: 153 ITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGSYGY 212
Query: 163 NEGAPSSKRAKQP 201
G SS QP
Sbjct: 213 GYGNSSSGGNSQP 225
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 98.7 bits (235), Expect = 9e-22
Identities = 48/90 (53%), Positives = 62/90 (68%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
+RD T KSKGY FVS+ K+ +AE AI+ MNGQWLG R+IRTNW+TRKP ++ PS
Sbjct: 64 IRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG----DQEKPS 119
Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270
K ++DE+YNQ+S NT+VY G S
Sbjct: 120 HYNEK--SYDEIYNQTSGDNTSVYVGNIAS 147
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW----STRKPP--AKGV 162
+ + + K +GYAFV F K A AI MN Q +G + +R +W T K P + G
Sbjct: 163 ITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGSYGY 222
Query: 163 NEGAPSSKRAKQP 201
G SS QP
Sbjct: 223 GYGNSSSGGNSQP 235
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 98.7 bits (235), Expect = 9e-22
Identities = 48/90 (53%), Positives = 62/90 (68%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
+RD T KSKGY FVS+ K+ +AE AI+ MNGQWLG R+IRTNW+TRKP ++ PS
Sbjct: 167 IRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG----DQEKPS 222
Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270
K ++DE+YNQ+S NT+VY G S
Sbjct: 223 HYNEK--SYDEIYNQTSGDNTSVYVGNIAS 250
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW----STRKPP--AKGV 162
+ + + K +GYAFV F K A AI MN Q +G + +R +W T K P + G
Sbjct: 266 ITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGSYGY 325
Query: 163 NEGAPSSKRAKQP 201
G SS QP
Sbjct: 326 GYGNSSSGGNSQP 338
Score = 32.7 bits (71), Expect = 0.066
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 34 YAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
YAFV F A A+Q MN + L R ++ NW+
Sbjct: 86 YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWA 119
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 98.7 bits (235), Expect = 9e-22
Identities = 48/90 (53%), Positives = 62/90 (68%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
+RD T KSKGY FVS+ K+ +AE AI+ MNGQWLG R+IRTNW+TRKP ++ PS
Sbjct: 135 IRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG----DQEKPS 190
Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270
K ++DE+YNQ+S NT+VY G S
Sbjct: 191 HYNEK--SYDEIYNQTSGDNTSVYVGNIAS 218
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW----STRKPP--AKGV 162
+ + + K +GYAFV F K A AI MN Q +G + +R +W T K P + G
Sbjct: 234 ITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGSYGY 293
Query: 163 NEGAPSSKRAKQP 201
G SS QP
Sbjct: 294 GYGNSSSGGNSQP 306
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 89.4 bits (212), Expect = 5e-19
Identities = 44/98 (44%), Positives = 58/98 (59%), Gaps = 12/98 (12%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
+RD T K KGY FVS+ ++ DAE AI MNG WLG R+IRTNW+TRKP G G
Sbjct: 164 IRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDEDGERGGDRG 223
Query: 181 SKRA------------KQPTFDEVYNQSSPTNTTVYCG 258
+R + T+DE++NQ++ NT+VY G
Sbjct: 224 DRRGGGGGGRDRYHNQSEKTYDEIFNQAAADNTSVYVG 261
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW----STRKPPAKGVNE 168
+ + +T K +GYAFV F K A AI MN +G + +R +W + KP +G
Sbjct: 281 INEVRTFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVRCSWGKSGDSGKPSERGSGG 340
Query: 169 GAPS 180
G S
Sbjct: 341 GGGS 344
Score = 32.7 bits (71), Expect = 0.066
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 34 YAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKR 189
YAFV F A A+Q+ NG+ L + + W+ +P G N P + R
Sbjct: 80 YAFVEFSDHNQATLALQSHNGRELLEKEMHVTWAF-EPREPGENRSKPETSR 130
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 81.8 bits (193), Expect = 1e-16
Identities = 40/86 (46%), Positives = 54/86 (62%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
+RD QT KSKGY FVSF K +AE AI MNG+W+G R++RTNW+ RK S
Sbjct: 167 IRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARK----------NS 216
Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCG 258
+ + TF++V+N + NT+VY G
Sbjct: 217 EENRDKLTFEQVFNSTKADNTSVYVG 242
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS-TRKPPAKGVN 165
+ + + K++ YAFV + KK A AI MNG+ + +R +W T+ P + +N
Sbjct: 263 IAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWGRTQAVPNQALN 318
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
RD + S GYA+V+F + ADAE A+ MN + + R +R WS R P A+ G
Sbjct: 90 RDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNG 145
Score = 31.5 bits (68), Expect = 0.15
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
SKGY FV F + A+ AI+ +NG L + +
Sbjct: 184 SKGYGFVHFETEHSAQTAIEKVNGMLLSDKKV 215
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
RD + S GYA+V+F + ADAE A+ MN + + R +R WS R P A+ G
Sbjct: 90 RDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNG 145
Score = 31.5 bits (68), Expect = 0.15
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
SKGY FV F + A+ AI+ +NG L + +
Sbjct: 184 SKGYGFVHFETEHSAQTAIEKVNGMLLSDKKV 215
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
+RD + SKG+AF++F ++ A++AMNGQ+L +R+I +++ ++ +KG G +
Sbjct: 133 MRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR-DSKGERHGTAA 191
Query: 181 SK--RAKQPTF 207
+ A+ P F
Sbjct: 192 ERMLAAQNPLF 202
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
+RD + SKG+AF++F ++ A++AMNGQ+L +R+I +++ ++ +KG G +
Sbjct: 143 MRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR-DSKGERHGTAA 201
Query: 181 SK--RAKQPTF 207
+ A+ P F
Sbjct: 202 ERMLAAQNPLF 212
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/56 (41%), Positives = 31/56 (55%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
RD T S GYA+V+F + ADAE A+ MN + L + +R WS R P + G
Sbjct: 65 RDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG 120
Score = 32.7 bits (71), Expect = 0.066
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRT-NWSTRKPPAKGVNEGAPSSKRAKQP 201
SKGY FV F + A+ AIQ +NG L + + + R + + E A
Sbjct: 159 SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVK 218
Query: 202 TFDEVYNQSS 231
F + YN+ +
Sbjct: 219 NFGDHYNKET 228
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMN 93
KSKG+ FV+F +AE A+QA++
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALH 273
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/56 (41%), Positives = 31/56 (55%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
RD T S GYA+V+F + ADAE A+ MN + L + +R WS R P + G
Sbjct: 65 RDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG 120
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMN 93
KSKG+ FV+F +AE A+QA++
Sbjct: 190 KSKGFGFVAFANPEEAETAVQALH 213
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/56 (41%), Positives = 31/56 (55%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
RD T S GYA+V+F + ADAE A+ MN + L + +R WS R P + G
Sbjct: 65 RDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG 120
Score = 32.7 bits (71), Expect = 0.066
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRT-NWSTRKPPAKGVNEGAPSSKRAKQP 201
SKGY FV F + A+ AIQ +NG L + + + R + + E A
Sbjct: 159 SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVK 218
Query: 202 TFDEVYNQSS 231
F + YN+ +
Sbjct: 219 NFGDHYNKET 228
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMN 93
KSKG+ FV+F +AE A+QA++
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALH 273
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 42.7 bits (96), Expect = 6e-05
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
VR+ +T KSKGY FVSF D A++ M+G+++G+R I+ S K
Sbjct: 235 VRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWK 282
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/47 (34%), Positives = 31/47 (65%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 141
V D +T + +G+AFV F ++A A+ A++ +NG R++R N++ +
Sbjct: 38 VYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYANK 84
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 39.9 bits (89), Expect = 4e-04
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA--KGVNEGAP 177
RD + +SKG+ FV F ++ DAE A+ +G+ + R +R + P+ +G G
Sbjct: 52 RDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGRGGGG 111
Query: 178 SSKRAKQP 201
+R++ P
Sbjct: 112 GRRRSRSP 119
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/45 (37%), Positives = 31/45 (68%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
VRD T +S GY FV++V++ DA A+ + NG L +++I+ +++
Sbjct: 74 VRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYA 118
Score = 31.5 bits (68), Expect = 0.15
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 186
D T SKG FV F KK +A+ AI+ +NG S + PA +G S
Sbjct: 162 DNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVKFANNPASNNPKGLLSDL 221
Query: 187 RAKQ 198
A Q
Sbjct: 222 EAVQ 225
Score = 29.9 bits (64), Expect = 0.46
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 16 TLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKP 147
T + KGYAFVS +A A+ ++NG L ++++ + + P
Sbjct: 410 TQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQVVFKSSTP 453
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 141
V D +T + +G+AF+ F ++ A+ A++ MNG R +R N + +
Sbjct: 37 VCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLANK 83
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 37.9 bits (84), Expect = 0.002
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVN-EGAP 177
V D +T K KGY F+ F AE AI+ +NG L R +R + A G+N E
Sbjct: 50 VHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD-----SAAGGMNMEEFG 104
Query: 178 SSKRAKQPTFDEVY 219
SS A P + Y
Sbjct: 105 SSSNAPAPVEENPY 118
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 37.1 bits (82), Expect = 0.003
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA--KGVNEGAP 177
RD + +SKG+ FV F ++ DAE A+ +G+ + R +R + P+ +G G
Sbjct: 52 RDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGRGGGG 111
Query: 178 SSKR-AKQPTFDEV 216
+R A +P E+
Sbjct: 112 GRRRTAAEPDVAEL 125
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 36.3 bits (80), Expect = 0.005
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
V D +T + +G+AFV F ++A A+ A+ NG R++R N
Sbjct: 36 VCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVN 78
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 35.9 bits (79), Expect = 0.007
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
+DP+T G+ F+ FV+KADAE + N + RS+ +W+ K
Sbjct: 131 KDPKTCA--GFGFIQFVEKADAEKGREFFNTNKVLGRSVAADWALDK 175
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 35.5 bits (78), Expect = 0.009
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
+RD L G+ FV F K DAE A+ +NG+ LG + ++S KP G + G
Sbjct: 29 IRD--VLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS--KPRGGGGDRG 81
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 35.5 bits (78), Expect = 0.009
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
+RD L G+ FV F K DAE A+ +NG+ LG + ++S KP G + G
Sbjct: 29 IRD--VLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS--KPRGGGGDRG 81
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 35.5 bits (78), Expect = 0.009
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
+RD L G+ FV F K DAE A+ +NG+ LG + ++S KP G + G
Sbjct: 29 IRD--VLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS--KPRGGGGDRG 81
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGV 162
SKG+ FV+ + DAE A Q ++G + R I N +T + +K V
Sbjct: 191 SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATARVHSKKV 236
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGV 162
SKG+ FV+ + DAE A Q ++G + R I N +T + +K V
Sbjct: 191 SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATARVHSKKV 236
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
DP T K +AFV + A A ++MNGQ LG R+++ N
Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVN 176
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
DP T K +AFV + A A ++MNGQ LG R+++ N
Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVN 176
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
DP T K +AFV + A A ++MNGQ LG R+++ N
Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVN 176
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 35.1 bits (77), Expect = 0.012
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPT 204
GY FV F +A+A+ I M+G+ L + I +W+ +P G P S+ + P+
Sbjct: 131 GYGFVLFDTRANAQKKIVEMDGKTLNGKLISVSWA--RPDTVGRKRKRPMSEESPTPS 186
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 33.5 bits (73), Expect = 0.038
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGS-RSIRTNWS 135
DP + S+GYAFV++ K DA AA + +G + + + ++ N S
Sbjct: 234 DPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNVS 277
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 150
K K YAF+ F ++ D A++ NG+ L + S KPP
Sbjct: 408 KVKDYAFIHFNERDDCLKAMEEWNGKELEGTVVEA--SLAKPP 448
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 32.7 bits (71), Expect = 0.066
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 19 LKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVN-EGAPSSKRAK 195
+ G+ FV F + DA+ A+ +NG+ L + + RK G N E + S R +
Sbjct: 32 IMKNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRK---VGYNEERSGSGFRGR 88
Query: 196 QPTF 207
+PTF
Sbjct: 89 EPTF 92
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 32.7 bits (71), Expect = 0.066
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRT-NWSTRKPPAKGVNEGAPSSKRAKQP 201
SKGY FV F + A+ AIQ +NG L + + + R + + E A
Sbjct: 96 SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVK 155
Query: 202 TFDEVYNQSS 231
F + YN+ +
Sbjct: 156 NFGDHYNKET 165
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMN 93
KSKG+ FV+F +AE A+QA++
Sbjct: 187 KSKGFGFVAFANPEEAETAVQALH 210
Score = 29.1 bits (62), Expect = 0.81
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 61 ADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
ADAE A+ MN + L + +R WS R P + G
Sbjct: 21 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG 57
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.087
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
+RD T KSKG+AF+ + + A+ NG L R IR +
Sbjct: 70 IRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVD 112
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 32.3 bits (70), Expect = 0.087
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQ 84
+RDP T +S+G+ FV+F K + +AA++
Sbjct: 55 MRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 32.3 bits (70), Expect = 0.087
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAI----QAMNGQWLGS-RSI-RTNWSTRKPPAKGV 162
+RDP T S+G+ FV+F AE+A+ + G+ + S R+I R S+ PP
Sbjct: 81 IRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPREQMSSMIPPPFFE 140
Query: 163 NEGAPSSK 186
+ AP K
Sbjct: 141 TDPAPGCK 148
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 32.3 bits (70), Expect = 0.087
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAI----QAMNGQWLGS-RSI-RTNWSTRKPPAKGV 162
+RDP T S+G+ FV+F AE+A+ + G+ + S R+I R S+ PP
Sbjct: 101 IRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPREQMSSMIPPPFFE 160
Query: 163 NEGAPSSK 186
+ AP K
Sbjct: 161 TDPAPGCK 168
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 32.3 bits (70), Expect = 0.087
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAI----QAMNGQWLGS-RSI-RTNWSTRKPPAKGV 162
+RDP T S+G+ FV+F AE+A+ + G+ + S R+I R S+ PP
Sbjct: 102 IRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPREQMSSMIPPPFFE 161
Query: 163 NEGAPSSK 186
+ AP K
Sbjct: 162 TDPAPGCK 169
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 32.3 bits (70), Expect = 0.087
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQ 84
+RDP T +S+G+ FV+F K + +AA++
Sbjct: 17 MRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 32.3 bits (70), Expect = 0.087
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQ 84
+RDP T +S+G+ FV+F K + +AA++
Sbjct: 17 MRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 32.3 bits (70), Expect = 0.087
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQ 84
+RDP T +S+G+ FV+F K + +AA++
Sbjct: 55 MRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 32.3 bits (70), Expect = 0.087
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQ 84
+RDP T +S+G+ FV+F K + +AA++
Sbjct: 55 MRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
V D + KG+A+V+F + AI +NG G+R ++ N
Sbjct: 44 VHDRDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVN 86
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 96
R+ +T KG+A+V F KA AE A ++MNG
Sbjct: 65 RNRRTGNHKGWAYVGFDNKAVAEIAAESMNG 95
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 31.1 bits (67), Expect = 0.20
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW 132
G+ FV + + DAE A+Q ++ + R IR +W
Sbjct: 79 GFCFVEYYTREDAELALQNISNTRMDDRVIRADW 112
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 31.1 bits (67), Expect = 0.20
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
D T SK + FVS+ A AI AMNG +GS+ ++
Sbjct: 369 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK 407
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 31.1 bits (67), Expect = 0.20
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
D T SK + FVS+ A AI AMNG +GS+ ++
Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK 571
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93
+RD T SKG FV+F + DA A A++
Sbjct: 87 LRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 31.1 bits (67), Expect = 0.20
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
D T SK + FVS+ A AI AMNG +GS+ ++
Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK 571
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93
+RD T SKG FV+F + DA A A++
Sbjct: 87 LRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 31.1 bits (67), Expect = 0.20
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
D T SK + FVS+ A AI AMNG +GS+ ++
Sbjct: 462 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK 500
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93
+RD T SKG FV+F + DA A A++
Sbjct: 87 LRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 31.1 bits (67), Expect = 0.20
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
D T SK + FVS+ A AI AMNG +GS+ ++
Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK 571
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93
+RD T SKG FV+F + DA A A++
Sbjct: 87 LRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 30.7 bits (66), Expect = 0.26
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
D T +SK + FVS+ ++AAI AMNG +G + ++
Sbjct: 463 DRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLK 501
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNG 96
SKG AFV + DA AI A++G
Sbjct: 163 SKGCAFVKYKHGLDAHMAISALHG 186
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 30.7 bits (66), Expect = 0.26
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 123
D T +SK + FVS+ ++AAI AMNG +G + ++
Sbjct: 463 DRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLK 501
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNG 96
SKG AFV + DA AI A++G
Sbjct: 163 SKGCAFVKYKHGLDAHMAISALHG 186
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 30.3 bits (65), Expect = 0.35
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
RD T KG+AFV+F + DA AI +N + ++ W+
Sbjct: 209 RDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKVEWT 252
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.9 bits (64), Expect = 0.46
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
SKGYAF ++ + AI +NG LG + +
Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQL 361
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.9 bits (64), Expect = 0.46
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
SKGYAF ++ + AI +NG LG + +
Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQL 361
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.9 bits (64), Expect = 0.46
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
SKGYAF ++ + AI +NG LG + +
Sbjct: 305 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQL 336
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.9 bits (64), Expect = 0.46
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
SKGYAF ++ + AI +NG LG + +
Sbjct: 308 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQL 339
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 29.5 bits (63), Expect = 0.61
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
SKG+ FV+ DA+ A NG + R + N +T++
Sbjct: 20 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 59
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 29.5 bits (63), Expect = 0.61
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
SKG+ FV+ DA+ A NG + R + N +T++
Sbjct: 138 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 177
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 29.5 bits (63), Expect = 0.61
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
SKG+ FV+ DA+ A NG + R + N +T++
Sbjct: 138 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 177
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 29.1 bits (62), Expect = 0.81
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 186
D ++ + +AFV F DAE A++A +G R IR ++ +GV PS +
Sbjct: 39 DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT------RGVGPRGPSGR 92
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
D ++ + +AFV F DAE A++A +G R IR ++
Sbjct: 39 DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93
+ D T KS+GY FV+ +A AE A + N
Sbjct: 67 ITDRNTQKSRGYGFVTMKDRASAERACKDPN 97
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
G +V F+K+ DAE A +N +W + I
Sbjct: 120 GNVYVKFMKEEDAEKAKNDLNNRWFNGQPI 149
>AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical
protein F40G9.12 protein.
Length = 230
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 30 GLCFCIICKESRCRSCHPGNE 92
G C CKE C++C P NE
Sbjct: 111 GKSVCEDCKEHECKACEPPNE 131
>Z74031-6|CAB54239.1| 227|Caenorhabditis elegans Hypothetical
protein F32D8.5b protein.
Length = 227
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 205 MLAVLLSYYWARLHSHPSLVVYALTSSYVWILIPAT 98
M+ VL SY W PS++++A+ ++ +L+ T
Sbjct: 92 MVPVLSSYLWEAAAERPSMMMFAIVANTFLVLLSFT 127
>Z74031-5|CAA98457.1| 225|Caenorhabditis elegans Hypothetical
protein F32D8.5a protein.
Length = 225
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 205 MLAVLLSYYWARLHSHPSLVVYALTSSYVWILIPAT 98
M+ VL SY W PS++++A+ ++ +L+ T
Sbjct: 90 MVPVLSSYLWEAAAERPSMMMFAIVANTFLVLLSFT 125
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAI 81
VRD T K KG+AFV+F + + A+
Sbjct: 279 VRDKDTGKGKGFAFVNFKQDSSVSLAL 305
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 25.0 bits (52), Expect(2) = 2.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
VRD ++ S YAF+ F E A M+ + R I ++S
Sbjct: 273 VRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 317
Score = 21.0 bits (42), Expect(2) = 2.3
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +1
Query: 139 RKPPAKGVNEGAPSSKRAKQPT 204
R+P K ++ +PS +R + P+
Sbjct: 344 RRPEVKRSHQRSPSPRRRRSPS 365
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 25.0 bits (52), Expect(2) = 2.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
VRD ++ S YAF+ F E A M+ + R I ++S
Sbjct: 273 VRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 317
Score = 21.0 bits (42), Expect(2) = 2.3
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +1
Query: 139 RKPPAKGVNEGAPSSKRAKQPT 204
R+P K ++ +PS +R + P+
Sbjct: 344 RRPEVKRSHQRSPSPRRRRSPS 365
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 25.0 bits (52), Expect(2) = 2.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
VRD ++ S YAF+ F E A M+ + R I ++S
Sbjct: 204 VRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 248
Score = 21.0 bits (42), Expect(2) = 2.4
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +1
Query: 139 RKPPAKGVNEGAPSSKRAKQPT 204
R+P K ++ +PS +R + P+
Sbjct: 275 RRPEVKRSHQRSPSPRRRRSPS 296
>Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical
protein F58B3.7 protein.
Length = 371
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 40 FVSFVKKADAEAAIQAMNGQWLGSRSI 120
FV F A A A MNG++ G RS+
Sbjct: 330 FVEFTNNAQAIKAFVMMNGRFFGGRSV 356
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIR--TNWSTRKPPAKGVNEGAPSSKRAKQP 201
G+AFV F DAE A ++G+ + S+R + KP + +R++ P
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSP 94
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIR--TNWSTRKPPAKGVNEGAPSSKRAKQP 201
G+AFV F DAE A ++G+ + S+R + KP + +R++ P
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSP 94
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIR--TNWSTRKPPAKGVNEGAPSSKRAKQP 201
G+AFV F DAE A ++G+ + S+R + KP + +R++ P
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSP 94
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/58 (20%), Positives = 26/58 (44%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 201
+GY +V + DAE +I+ M+G + ++ + + +P +R+ P
Sbjct: 175 RGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMTIGRQSVPFQRRSSPFRRRSPPP 232
>Z81473-1|CAB03897.1| 302|Caenorhabditis elegans Hypothetical
protein C17D12.1a protein.
Length = 302
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 151 LVVYALTSSYVWILIPATGHSLPGWQLRH 65
L+ YA +W+L+P GHS+ W + H
Sbjct: 18 LIAYADYVILIWLLLPTFGHSI--WTVFH 44
>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
K04G2.8b protein.
Length = 1188
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 91 NGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 201
NG + +I T ++ +KPP G N G S++++ P
Sbjct: 1142 NGSPIAKSAIVTPYNYQKPPFTGRNNGEMSNEKSVTP 1178
>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
K04G2.8a protein.
Length = 1186
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 91 NGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 201
NG + +I T ++ +KPP G N G S++++ P
Sbjct: 1140 NGSPIAKSAIVTPYNYQKPPFTGRNNGEMSNEKSVTP 1176
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW 132
D +T KGYA V + + +A AI N L ++++ +W
Sbjct: 89 DRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKVDW 130
>U41994-3|AAO91712.1| 251|Caenorhabditis elegans Rnase h protein
1.0, isoform c protein.
Length = 251
Score = 27.1 bits (57), Expect = 3.3
Identities = 21/77 (27%), Positives = 31/77 (40%)
Frame = +1
Query: 40 FVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVY 219
F F +A+A + A N GS+ + ST K +EG ++ K T +EV
Sbjct: 37 FKKFATEAEARKFV-ADNMSVPGSKPVTPAVSTSSATRKRTHEGTKFTEAKKMKTEEEVI 95
Query: 220 NQSSPTNTTVYCGGFLS 270
+ VY G S
Sbjct: 96 DPEFANAPVVYTDGACS 112
>U40797-8|AAL08029.1| 332|Caenorhabditis elegans Serpentine
receptor, class u protein7 protein.
Length = 332
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 238 LSVSFDYKLRQMLAVLLSYYWARLHSHPSLVVYALTSSY 122
LS FDY + A + W +H +L+++ LTS +
Sbjct: 77 LSFFFDYMSNRFPATGMMTSWCASSNHETLLIFILTSHF 115
>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
Length = 1186
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 91 NGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 201
NG + +I T ++ +KPP G N G S++++ P
Sbjct: 1140 NGSPIAKSAIVTPYNYQKPPFTGRNNGEMSNEKSVTP 1176
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 80 SRQ*MASGWDQDPYVRTGQRVNHQR 154
SR+ + G D + Y R+G+++NH R
Sbjct: 40 SRRRSSGGVDGNGYTRSGRKINHNR 64
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 80 SRQ*MASGWDQDPYVRTGQRVNHQR 154
SR+ + G D + Y R+G+++NH R
Sbjct: 40 SRRRSSGGVDGNGYTRSGRKINHNR 64
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 80 SRQ*MASGWDQDPYVRTGQRVNHQR 154
SR+ + G D + Y R+G+++NH R
Sbjct: 40 SRRRSSGGVDGNGYTRSGRKINHNR 64
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 80 SRQ*MASGWDQDPYVRTGQRVNHQR 154
SR+ + G D + Y R+G+++NH R
Sbjct: 40 SRRRSSGGVDGNGYTRSGRKINHNR 64
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 80 SRQ*MASGWDQDPYVRTGQRVNHQR 154
SR+ + G D + Y R+G+++NH R
Sbjct: 40 SRRRSSGGVDGNGYTRSGRKINHNR 64
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 80 SRQ*MASGWDQDPYVRTGQRVNHQR 154
SR+ + G D + Y R+G+++NH R
Sbjct: 40 SRRRSSGGVDGNGYTRSGRKINHNR 64
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST 138
G+AFV + DAE A++A++G + R ST
Sbjct: 40 GFAFVEYDDVRDAEDAVRALDGSRICGVRARVELST 75
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST 138
G+AFV + DAE A++A++G + R ST
Sbjct: 40 GFAFVEYDDVRDAEDAVRALDGSRICGVRARVELST 75
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST 138
G+AFV + DAE A++A++G + R ST
Sbjct: 40 GFAFVEYDDVRDAEDAVRALDGSRICGVRARVELST 75
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 80 SRQ*MASGWDQDPYVRTGQRVNHQR 154
SR+ + G D + Y R+G+++NH R
Sbjct: 40 SRRRSSGGVDGNGYTRSGRKINHNR 64
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
KSKG + + +A A+ +NGQ L R++
Sbjct: 226 KSKGVCVIQYTHPIEAVQAVSMLNGQRLFDRNL 258
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWL-GSRSIRTN 129
KGY F+ F+ +A + +NG + G + IR N
Sbjct: 108 KGYCFIEFITFDEARQTLYDLNGNRIPGFKDIRFN 142
>Z48241-8|CAD44101.1| 589|Caenorhabditis elegans Hypothetical
protein C48D5.2c protein.
Length = 589
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 172 APSSKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270
A ++ R PT + YN SSP N+ F S
Sbjct: 118 AKAAARGLPPTNQQAYNTSSPRNSVASYSSFAS 150
>Z48241-7|CAA88287.1| 1026|Caenorhabditis elegans Hypothetical
protein C48D5.2a protein.
Length = 1026
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 172 APSSKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270
A ++ R PT + YN SSP N+ F S
Sbjct: 555 AKAAARGLPPTNQQAYNTSSPRNSVASYSSFAS 587
>Z48241-2|CAB54194.1| 624|Caenorhabditis elegans Hypothetical
protein C48D5.2b protein.
Length = 624
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 172 APSSKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270
A ++ R PT + YN SSP N+ F S
Sbjct: 153 AKAAARGLPPTNQQAYNTSSPRNSVASYSSFAS 185
>Z36237-4|CAD44107.1| 589|Caenorhabditis elegans Hypothetical
protein C48D5.2c protein.
Length = 589
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 172 APSSKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270
A ++ R PT + YN SSP N+ F S
Sbjct: 118 AKAAARGLPPTNQQAYNTSSPRNSVASYSSFAS 150
>Z36237-3|CAA85272.1| 1026|Caenorhabditis elegans Hypothetical
protein C48D5.2a protein.
Length = 1026
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 172 APSSKRAKQPTFDEVYNQSSPTNTTVYCGGFLS 270
A ++ R PT + YN SSP N+ F S
Sbjct: 555 AKAAARGLPPTNQQAYNTSSPRNSVASYSSFAS 587
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 13 QTLKSKGYAFVSFVKKADAEAAIQAMNG 96
+TLK +G A V F + A AA +A+NG
Sbjct: 45 RTLKMRGQAHVIFKELPAASAAREALNG 72
>Z73105-1|CAA97442.2| 525|Caenorhabditis elegans Hypothetical
protein R13.3 protein.
Length = 525
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 217 KLRQMLAVLLSYYWARLH-SHPSLVVYALTSSYVWILIPATGHSLPG 80
+ R+MLA+L +Y W + ++P +V A+ S + LI L G
Sbjct: 219 EFRKMLALLSNYDWVPIPLAYPQVVFLAVRSYFFMALIARQSVLLDG 265
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 109 SRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSS 231
S+ + T +KPP K G SSK+ + + Y +S
Sbjct: 44 SQGVPTTSEKKKPPPKKKKGGKKSSKKKNNCDYPDPYKSTS 84
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 109 SRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSS 231
S+ + T +KPP K G SSK+ + + Y +S
Sbjct: 44 SQGVPTTSEKKKPPPKKKKGGKKSSKKKNNCDYPDPYKSTS 84
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93
+RD T SKG FV+F + DA A A++
Sbjct: 87 LRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93
+RD T SKG FV+F + DA A A++
Sbjct: 87 LRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93
+RD T SKG FV+F + DA A A++
Sbjct: 87 LRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117
>AY515708-1|AAR99658.1| 525|Caenorhabditis elegans bestrophin 1
protein.
Length = 525
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 217 KLRQMLAVLLSYYWARLH-SHPSLVVYALTSSYVWILIPATGHSLPG 80
+ R+MLA+L +Y W + ++P +V A+ S + LI L G
Sbjct: 219 EFRKMLALLSNYDWVPIPLAYPQVVFLAVRSYFFMALIARQSVLLDG 265
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 109 SRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSS 231
S+ + T +KPP K G SSK+ + + Y +S
Sbjct: 44 SQGVPTTSEKKKPPPKKKKGGKKSSKKKNNCDYPDPYKSTS 84
>U50311-1|AAA92307.1| 492|Caenorhabditis elegans Hypothetical
protein C25E10.5 protein.
Length = 492
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 237 CR*ALIINFVKCWLFCSLTTGRAFIHTLRWWFTR*PVRTY 118
CR I+ K +L C++ +G F+ T + F+ PV Y
Sbjct: 333 CRLGQILPQQKVFLVCTIASGCVFLITYPYEFSSKPVVLY 372
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.130 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,797,883
Number of Sequences: 27780
Number of extensions: 131461
Number of successful extensions: 587
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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