Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0296
(334 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 61 2e-10
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 59 6e-10
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 59 6e-10
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 59 8e-10
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 53 4e-08
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 50 4e-07
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 50 4e-07
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 45 1e-05
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 44 3e-05
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 43 4e-05
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 43 6e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 42 8e-05
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 42 8e-05
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 42 1e-04
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 42 1e-04
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 41 2e-04
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 41 2e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 41 2e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 41 2e-04
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 40 3e-04
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 40 3e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 40 3e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 40 5e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 40 5e-04
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 40 5e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 40 5e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 40 5e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 40 5e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 40 5e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 39 7e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 39 0.001
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 39 0.001
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 39 0.001
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.001
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.001
At5g51300.2 68418.m06360 splicing factor-related contains simila... 38 0.002
At5g51300.1 68418.m06359 splicing factor-related contains simila... 38 0.002
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.002
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 38 0.002
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.002
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 37 0.003
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 37 0.003
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 37 0.003
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 37 0.004
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 37 0.004
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 36 0.005
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 36 0.005
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 35 0.012
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 35 0.012
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 35 0.012
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 35 0.016
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 35 0.016
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 35 0.016
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 35 0.016
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 34 0.021
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 34 0.027
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 34 0.027
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 33 0.036
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 33 0.036
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 33 0.036
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 33 0.036
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 33 0.048
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 33 0.048
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 33 0.063
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 33 0.063
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 33 0.063
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 33 0.063
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 33 0.063
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 33 0.063
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 33 0.063
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 33 0.063
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 32 0.083
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 32 0.083
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 32 0.083
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 32 0.11
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 32 0.11
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 31 0.15
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 31 0.15
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 31 0.15
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.19
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 0.19
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 31 0.25
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 31 0.25
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 31 0.25
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 31 0.25
At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain... 30 0.33
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain... 30 0.33
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 30 0.33
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 30 0.44
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 30 0.44
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 30 0.44
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 30 0.44
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 29 0.59
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 29 0.59
At2g47310.1 68415.m05906 flowering time control protein-related ... 29 0.59
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 29 0.59
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 29 0.77
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 29 0.77
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 0.77
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 29 0.77
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 29 0.77
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 29 0.77
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 29 1.0
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 29 1.0
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 29 1.0
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 29 1.0
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 1.4
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 28 1.4
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 28 1.8
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 28 1.8
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 27 2.4
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 27 2.4
At1g48360.1 68414.m05402 expressed protein ; expression supporte... 27 2.4
At3g52840.1 68416.m05823 beta-galactosidase, putative / lactase,... 27 3.1
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 27 3.1
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 27 3.1
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 27 3.1
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 27 3.1
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 27 4.1
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 27 4.1
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 27 4.1
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 27 4.1
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 27 4.1
At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical... 27 4.1
At5g47580.1 68418.m05873 expressed protein strong similarity to ... 26 5.5
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 26 5.5
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 26 5.5
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 26 5.5
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 26 5.5
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 26 7.2
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 26 7.2
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 26 7.2
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 26 7.2
At4g08690.1 68417.m01432 SEC14 cytosolic factor family protein /... 26 7.2
At3g29270.2 68416.m03675 expressed protein 26 7.2
At3g29270.1 68416.m03674 expressed protein 26 7.2
At3g10650.1 68416.m01281 expressed protein 26 7.2
At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1) ide... 26 7.2
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 26 7.2
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 26 7.2
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 26 7.2
At5g37620.1 68418.m04531 DC1 domain-containing protein contains ... 25 9.5
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 25 9.5
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 25 9.5
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 25 9.5
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 25 9.5
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 25 9.5
At3g23310.1 68416.m02940 protein kinase, putative contains prote... 25 9.5
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 25 9.5
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 25 9.5
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 61.3 bits (142), Expect = 2e-10
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR---------KPPAKG 159
D +T +S+G+ FVSF + DA+ AI MNG+WL SR IR NW+T+ K
Sbjct: 178 DQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKS 237
Query: 160 VNEGAPSSKRAKQPTFDEVYNQSSPTNTTVYCG 258
V E S + T +E +++ TTVY G
Sbjct: 238 VVELTTGSSEDGKETLNEETPENNSQFTTVYVG 270
Score = 32.7 bits (71), Expect = 0.063
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQ-WLGSRSIRTNWSTRKPPAKGVNEGAP 177
+ + + + KG+ FV + +A AIQ N Q +L +R I+ +W + P + P
Sbjct: 293 IEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKCSWGNKPTPPGTASNPLP 352
Query: 178 SSKRAKQP 201
A P
Sbjct: 353 PPAPAPVP 360
Score = 30.3 bits (65), Expect = 0.33
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 34 YAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
Y FV + + A AI ++NG+ L + I+ NW+
Sbjct: 98 YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWA 131
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 59.3 bits (137), Expect = 6e-10
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR---------KPPAKG 159
D +T +S+G+ FVSF + DA+ AI MNG+W+ SR IR NW+T+ K
Sbjct: 186 DQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKS 245
Query: 160 VNEGAPSSKRAKQPTFDEVYNQSSPTNTTVYCG 258
V E S + +E +++P TTVY G
Sbjct: 246 VVELTNGSSEDGRELSNEDAPENNPQFTTVYVG 278
Score = 36.7 bits (81), Expect = 0.004
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQ-WLGSRSIRTNWSTRKPPAKGVNEGAP 177
+ + + + KG+ FV + +A AIQ N Q +L SR IR +W + P+ + P
Sbjct: 301 IEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTPSGTASNPLP 360
Query: 178 SSKRAKQPT 204
A P+
Sbjct: 361 PPAPASVPS 369
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 34 YAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
Y FV + + A AI +NG+ + + ++ NW+
Sbjct: 102 YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 59.3 bits (137), Expect = 6e-10
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR---------KPPAKG 159
D +T +S+G+ FVSF + DA+ AI MNG+W+ SR IR NW+T+ K
Sbjct: 182 DQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKS 241
Query: 160 VNEGAPSSKRAKQPTFDEVYNQSSPTNTTVYCG 258
V E S + +E +++P TTVY G
Sbjct: 242 VVELTNGSSEDGRELSNEDAPENNPQFTTVYVG 274
Score = 36.7 bits (81), Expect = 0.004
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQ-WLGSRSIRTNWSTRKPPAKGVNEGAP 177
+ + + + KG+ FV + +A AIQ N Q +L SR IR +W + P+ + P
Sbjct: 297 IEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTPSGTASNPLP 356
Query: 178 SSKRAKQPT 204
A P+
Sbjct: 357 PPAPASVPS 365
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 34 YAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
Y FV + + A AI +NG+ + + ++ NW+
Sbjct: 102 YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 58.8 bits (136), Expect = 8e-10
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 186
D +T +S+G+ FVSF + DA+ AI + G+WLGSR IR NW+T K G ++ + SK
Sbjct: 173 DQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWAT-KGATSGEDKQSSDSK 231
Query: 187 RAKQPTF------DEVYNQSSPTN----TTVYCG 258
+ T + N +P N TTVY G
Sbjct: 232 SVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVG 265
Score = 34.7 bits (76), Expect = 0.016
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN-GQWLGSRSIRTNWSTRKPPAKGVNEGAP 177
+ + + + KG+ FV + +A AIQ N +L R ++ +W ++ PA + P
Sbjct: 288 IEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKPTPAGTASNPLP 347
Query: 178 SSKRAKQPTF 207
A P F
Sbjct: 348 PPAPAPIPGF 357
Score = 30.3 bits (65), Expect = 0.33
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
+ Y FV + + A AI ++NG+ L + I+ NW+
Sbjct: 89 EKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWA 126
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 53.2 bits (122), Expect = 4e-08
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI---RTNWSTRKPPAKGVNEG 171
+RD +T K+KGY FVSF+ AD AA++ MNG+++G+R I +++W R +
Sbjct: 169 IRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQK 228
Query: 172 APSSKRAK 195
S+K+ K
Sbjct: 229 HHSNKKQK 236
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 50.0 bits (114), Expect = 4e-07
Identities = 32/86 (37%), Positives = 44/86 (51%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
V D T +SKGY FV F +++ A+ MNGQ+ SR +RT + K P P+
Sbjct: 206 VNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL----TMQPA 261
Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCG 258
S + Q E S PTNTT++ G
Sbjct: 262 SYQNTQGNSGE----SDPTNTTIFVG 283
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW----STRKPPAKGVNEGAPSSKRAK 195
K FV + +A AE A+ +NG LG +SIR +W S ++ G
Sbjct: 313 KRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPDQAQYGGGGGYYGY 372
Query: 196 QPTFDEVYNQS-SPTNTTVYCGGF 264
P E Y + P + Y GG+
Sbjct: 373 PPQGYEAYGYAPPPQDPNAYYGGY 396
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 50.0 bits (114), Expect = 4e-07
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
+RDP T S+G+ F+S+ ++AAI++M GQ+L +R I +++ +K KG G P+
Sbjct: 145 MRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKK-DTKGERHGTPA 203
Query: 181 SK--RAKQPT 204
+ A PT
Sbjct: 204 ERLLAATNPT 213
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSS 183
+D T + Y F+ + + DA+ AI+ +N L + IR N +++ K ++ GA
Sbjct: 58 KDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQ--DKKSLDVGANLF 115
Query: 184 KRAKQPTFDE 213
P DE
Sbjct: 116 IGNLDPDVDE 125
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
D +T S+G+ FVSFV + DA+ AI +NG + +R WST K
Sbjct: 208 DQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEWSTPK 253
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 43.6 bits (98), Expect = 3e-05
Identities = 29/87 (33%), Positives = 39/87 (44%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
V D T +SKGY FV F + + A+ MNGQ+ +R +R PA N P
Sbjct: 187 VLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIG------PAANKN-ALPM 239
Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCGG 261
Q T + P NTT++ GG
Sbjct: 240 QPAMYQNTQGANAGDNDPNNTTIFVGG 266
Score = 39.5 bits (88), Expect = 5e-04
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW--STRKPPAKGVNEGAPSSKRAKQP 201
K FV + KA AE A+ +NG LG +SIR +W S K + G QP
Sbjct: 295 KRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQP 354
Query: 202 TFDEVYNQSSPT-NTTVYCGGF 264
Y PT + Y GG+
Sbjct: 355 QGGYGYAAQPPTQDPNAYYGGY 376
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKP 147
D +T S+G+ FV+FV + DA+ AI +NG + +R W+T +P
Sbjct: 247 DQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRP 293
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 42.7 bits (96), Expect = 6e-05
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
V DP T +SKGY FV F ++++ A+ MNG + +R +R + +T K
Sbjct: 149 VTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK 196
Score = 42.7 bits (96), Expect = 6e-05
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
+KGY +V F + AE A+Q M GQ +G +++R +WS V + P+
Sbjct: 271 TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWVTQADPN 322
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 42.3 bits (95), Expect = 8e-05
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKG 159
V D +T +S+G+ FV+ + AI A++GQ L R+IR N + +PP +G
Sbjct: 276 VYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRG 328
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 42.3 bits (95), Expect = 8e-05
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST-RKPPAKGVNEGAP 177
V D T +SKGY FV F + + A+ MNG + SR +R +T ++ A G G+
Sbjct: 246 VIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQ 305
Query: 178 SSKRAKQPTFDEVYNQSSPTNTTVYCGG 261
+ A + + N+T++ GG
Sbjct: 306 ALTLAGGHGGNGSMSDGESNNSTIFVGG 333
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKP 147
KG FV F + AE AI +NG +G ++R +W R P
Sbjct: 362 KGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWG-RSP 400
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 41.9 bits (94), Expect = 1e-04
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKG 159
KGYA + + KK +A++AI AMNG L ++++ +W+ P+ G
Sbjct: 136 KGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGPSGG 179
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSS 183
KG+AFV F K DA AI+ NG G R I +W+ K G + +S
Sbjct: 372 KGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPKNIYNGAADATTAS 423
Score = 33.9 bits (74), Expect = 0.027
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKP 147
+G+AFV F + D AI+ NG +G R I + +P
Sbjct: 61 RGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHRP 100
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 153
+ D +T +S+G+ FVSF + A AI+ M+G+ L R IR N +T + A
Sbjct: 67 IADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSA 117
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 153
+ D +T +S+G+ FVSF + A AI+ M+G+ L R IR N +T + A
Sbjct: 67 IADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSA 117
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
+ D +T +S+G+ FV+F A +AIQA++G+ L R ++ N++ + G G
Sbjct: 72 ILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGGGFGGG 128
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
R P T KS G+ FV+F + D EAAI A+N L + IR N
Sbjct: 210 RVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVN 251
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 153
D +T +S+G+ FV+F + A AAI M+G+ L R IR N + +P A
Sbjct: 69 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 117
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 153
D +T +S+G+ FV+F + A AAI M+G+ L R IR N + +P A
Sbjct: 69 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 117
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSS 183
RD T S GY +V++ DAE A+Q +N +L + IR +S+R A+ G
Sbjct: 79 RDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFV 138
Query: 184 KRAKQPTFDEVYNQS-SPTNTTVYC 255
K + ++ +++ S T V C
Sbjct: 139 KNLDKSVDNKTLHEAFSGCGTIVSC 163
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
+RDP SKG FV+F ++A + MNG+ +G + + + RK
Sbjct: 360 MRDPSGT-SKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
+S+GY FV F + A+ AI+ +NG+ L + I
Sbjct: 172 QSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQI 204
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 39.5 bits (88), Expect = 5e-04
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
++D QT + KG+ F++F + DA+ A++A+NG+ + R I
Sbjct: 98 IKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 16 TLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
T +S+GY FV+F+ + A +AI AMNGQ L +I N
Sbjct: 68 TGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVN 105
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 39.5 bits (88), Expect = 5e-04
Identities = 24/75 (32%), Positives = 34/75 (45%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 201
+SKGY FV F K+ A+AAI +NG L + + R+ GA P
Sbjct: 170 RSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGA-------VP 222
Query: 202 TFDEVYNQSSPTNTT 246
+F VY ++ P T
Sbjct: 223 SFTNVYVKNLPKEIT 237
Score = 29.5 bits (63), Expect = 0.59
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
S+G+ FV++ +A A++ MNG+ +G + + + RK
Sbjct: 367 SRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRK 406
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
V D T +S+GY FV + KA+ E A+++++G L R+IR N + K
Sbjct: 209 VFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 16 TLKSKGYAFVSFVKKADAEAAIQAMNG-QWLGSRSIRTNWSTRKPPAK 156
T +S+G+AFV+ D I ++G ++LG R+++ N++ + P K
Sbjct: 122 TGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLG-RALKVNFADKPKPNK 168
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 39.5 bits (88), Expect = 5e-04
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 156
KG FV FV + +AE A++ +NG +G +++R +W R P K
Sbjct: 341 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWG-RNPANK 382
Score = 35.9 bits (79), Expect = 0.007
Identities = 25/87 (28%), Positives = 37/87 (42%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
V D T +SKGY FV F + + A+ MNG SR++R PA
Sbjct: 232 VLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIG------PATPRKTNGYQ 285
Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCGG 261
+ P+ ++ NTT++ GG
Sbjct: 286 QQGGYMPSGAFTRSEGDTINTTIFVGG 312
Score = 29.5 bits (63), Expect = 0.59
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGS--RSIRTNWSTRKPPAKGVNEGA 174
+R+ S+GY FV F A+ +Q NG + + + R NW++ K +
Sbjct: 137 IRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNG 196
Query: 175 P 177
P
Sbjct: 197 P 197
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 39.5 bits (88), Expect = 5e-04
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 156
KG FV FV + +AE A++ +NG +G +++R +W R P K
Sbjct: 339 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWG-RNPANK 380
Score = 34.3 bits (75), Expect = 0.021
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST-RKPPAKGVNEGAP 177
V D T +SKGY FV F + + A+ MNG SR++R +T RK G
Sbjct: 230 VLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYM 289
Query: 178 SSKRAKQPTFDEVYNQSSPTNTTVYCGG 261
+ +P D + NTT++ GG
Sbjct: 290 PNGTLTRPEGDIM-------NTTIFVGG 310
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGS--RSIRTNWSTRKPPAKGVNEGA 174
+R+ S+GY FV F A+ ++ NG + + + R NW++ K +
Sbjct: 135 IRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNG 194
Query: 175 P 177
P
Sbjct: 195 P 195
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 39.5 bits (88), Expect = 5e-04
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSS-KRAKQPT 204
K FV F +K+ AE A++ +NG LG ++R +W R P K G PS
Sbjct: 296 KRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWG-RSPSNK--QSGDPSQFYYGGYGQ 352
Query: 205 FDEVYNQSSPTNTTVYCGGF 264
E Y + P + Y GG+
Sbjct: 353 GQEQYGYTMPQDPNAYYGGY 372
Score = 38.7 bits (86), Expect = 0.001
Identities = 27/87 (31%), Positives = 39/87 (44%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
V D T ++KGY FV F +++ A+ MNG +R +R + K G + S
Sbjct: 188 VIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQS 247
Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCGG 261
S V + P NTTV+ GG
Sbjct: 248 SAAG-------VTTDNDPNNTTVFVGG 267
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
D +T +S+G+AFV+F +A A+Q ++GQ L R IR N++T +
Sbjct: 68 DRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATER 112
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
+ D +T +S+G+ FV+F + + AI+ MNGQ L RSI N
Sbjct: 40 INDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVN 82
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
+ D +T +S+G+ FV+F + + AI+ MNGQ L RSI N
Sbjct: 40 INDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVN 82
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 38.7 bits (86), Expect = 0.001
Identities = 27/87 (31%), Positives = 39/87 (44%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
V D T ++KGY FV F +++ A+ MNG +R +R + K G + S
Sbjct: 188 VIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQS 247
Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYCGG 261
S V + P NTTV+ GG
Sbjct: 248 SAAG-------VTTDNDPNNTTVFVGG 267
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG---- 171
RD +T S+G+AFV + K +A A++ ++G+ + R I ++ P A+ +++G
Sbjct: 49 RDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVE 108
Query: 172 -APSSKRAK 195
P S+R++
Sbjct: 109 PPPKSRRSR 117
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG---- 171
RD +T S+G+AFV + K +A A++ ++G+ + R I ++ P A+ +++G
Sbjct: 49 RDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVE 108
Query: 172 -APSSKRAK 195
P S+R++
Sbjct: 109 PPPKSRRSR 117
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 150
++D T SKGY FV + A A+QAMNG R++ + + PP
Sbjct: 512 IKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPP 561
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 150
++D T SKGY FV + A A+QAMNG R++ + + PP
Sbjct: 512 IKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPP 561
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
+ + +T +S GY +V F K DA++A++AMNG++ R I
Sbjct: 109 IANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFI 148
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
V D + +SKG+ FV+F +A+ A+ NGQ L R+I +++ K + G G P
Sbjct: 66 VMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAK-QSLGGGGGYPI 124
Query: 181 SKRAKQP 201
++ P
Sbjct: 125 ARGPPDP 131
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.9 bits (84), Expect = 0.002
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +1
Query: 16 TLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAK 195
T +SKGY FV F K+ A+AAI +NG + + + R+ + +E P+
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRR-QERARDENTPT----- 225
Query: 196 QPTFDEVYNQSSP 234
P F VY ++ P
Sbjct: 226 -PRFTNVYVKNLP 237
Score = 34.7 bits (76), Expect = 0.016
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 13 QTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 171
Q +S GYA+++F DA A++A+N L R IR S R P + +G
Sbjct: 84 QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKG 136
Score = 31.5 bits (68), Expect = 0.15
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 186
+PQ + S+G+ FV++ +A A+ MNG+ +G + + + RK + + S
Sbjct: 366 NPQGM-SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQI 424
Query: 187 RAKQP 201
RA P
Sbjct: 425 RAPGP 429
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
+RD T +S+G+ FV++ ++AEAA+ M+G+ L R +
Sbjct: 35 MRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRV 74
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKP 147
KG FV F + AE AI+++NG +G ++R +W R P
Sbjct: 356 KGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWG-RSP 394
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
V D T +SKGY FV F + + A+ MNG + +R +R +T K
Sbjct: 235 VIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK 282
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 141
DP+ +S GY FVSF + +AE AI +NG+ + R I +S R
Sbjct: 230 DPEG-RSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLR 273
Score = 30.3 bits (65), Expect = 0.33
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR--KPPAKGVNE---GAPSSK 186
K++G+AFV+ +A+AAI + + R I +++ R KP K N+ AP
Sbjct: 133 KNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDT 192
Query: 187 RAK 195
R K
Sbjct: 193 RHK 195
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 150
+ D + +SKG+ FV+ + + AI ++NG L R IR + + +PP
Sbjct: 281 IYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPP 330
Score = 34.7 bits (76), Expect = 0.016
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 156
+ D T +S+G+ FV+ A+ EAA Q NG R +R N PP K
Sbjct: 131 IYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN--AGPPPPK 180
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 150
+ D + +SKG+ FV+ + + AI ++NG L R IR + + +PP
Sbjct: 289 IYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPP 338
Score = 34.7 bits (76), Expect = 0.016
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 156
+ D T +S+G+ FV+ A+ EAA Q NG R +R N PP K
Sbjct: 131 IYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN--AGPPPPK 180
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 13 QTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
++++ K Y FV+F + A+ AI+ M+G+ +G R++R N
Sbjct: 42 RSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAVRVN 80
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK-GVNEGAP 177
+ D T +S+G+ FV+ ++ EAA Q NG L R +R N P + G + G
Sbjct: 123 IYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPR 182
Query: 178 SS 183
SS
Sbjct: 183 SS 184
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/52 (28%), Positives = 31/52 (59%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 156
+ D + +SKG+ FV++ + + AI++++G L R IR + + +PP +
Sbjct: 236 IYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRR 287
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
V D +T +S+G+ FV + + AI A++GQ L R+I+ N
Sbjct: 239 VSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 35.1 bits (77), Expect = 0.012
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQ 99
+ + +T +S GY +V F K DA++A++AMNG+
Sbjct: 90 IANERTRQSLGYGYVWFNSKEDAQSAVEAMNGK 122
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
D +T +SKG+ FV+F + AI MNGQ L R+I
Sbjct: 78 DRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNI 115
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 34.7 bits (76), Expect = 0.016
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
V+D +T SKGYAF + + + A A+NG +G +++ + + + +
Sbjct: 391 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVL 450
Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYC 255
+Q F V Q TTV C
Sbjct: 451 LHAQQQIAFQRVMLQPGAVATTVVC 475
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 34.7 bits (76), Expect = 0.016
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
V+D +T SKGYAF + + + A A+NG +G +++ + + + +
Sbjct: 391 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVL 450
Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYC 255
+Q F V Q TTV C
Sbjct: 451 LHAQQQIAFQRVMLQPGAVATTVVC 475
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 34.7 bits (76), Expect = 0.016
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
V+D +T SKGYAF + + + A A+NG +G +++ + + + +
Sbjct: 391 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVL 450
Query: 181 SKRAKQPTFDEVYNQSSPTNTTVYC 255
+Q F V Q TTV C
Sbjct: 451 LHAQQQIAFQRVMLQPGAVATTVVC 475
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 34.7 bits (76), Expect = 0.016
Identities = 13/40 (32%), Positives = 27/40 (67%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
+RD +T + KG+ F++F + DA A+++++G+ + R I
Sbjct: 39 IRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLI 78
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 34.3 bits (75), Expect = 0.021
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
++D +SKGYAF+ F + DA AI+ M+ + R I
Sbjct: 72 IKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMI 111
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 33.9 bits (74), Expect = 0.027
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSS 183
D T SK + FVS+ +A A+ AI MNG+ LG + ++ + N G PSS
Sbjct: 383 DKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLK------RDSNNGQPSS 435
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQ 99
SKG AF+ + K A +A++++NG+
Sbjct: 145 SKGCAFLKYETKEQAVSAMESINGK 169
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.9 bits (74), Expect = 0.027
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
+ + T +S+G+ F+SF + ++A+ MNG + R++R N ++ +
Sbjct: 251 IYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASER 298
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 33.5 bits (73), Expect = 0.036
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
++D + SKGYAFV+F K A+ AI+ ++ + ++IR + S K
Sbjct: 148 MKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETK 195
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 33.5 bits (73), Expect = 0.036
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
V D T K KGYAF+ ++ D +AA + +GQ + R +
Sbjct: 170 VTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRV 209
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 33.5 bits (73), Expect = 0.036
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
+S+G+ FV F ++ DA +A AM+G+ L R +R +++ +
Sbjct: 80 RSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALER 120
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 33.5 bits (73), Expect = 0.036
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 150
R+PQT +S+G +V+ A+ AI +++G +G R +R +S P
Sbjct: 141 RNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNP 189
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 33.1 bits (72), Expect = 0.048
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
+G V F + DA+ I+AMNG+W R I +
Sbjct: 454 QGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHAS 487
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 33.1 bits (72), Expect = 0.048
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST 138
V D T +SKGY FV F + + A+ MNG SR++R +T
Sbjct: 230 VLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT 275
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGS--RSIRTNWSTRKPPAKGVNEGA 174
+R+ S+GY FV F A+ ++ NG + + + R NW++ K +
Sbjct: 135 IRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNG 194
Query: 175 P 177
P
Sbjct: 195 P 195
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 32.7 bits (71), Expect = 0.063
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQW-LGSRSIRTN 129
DP+T + KG+ F+ FV+ ++AA A+NG+ + R+I+ +
Sbjct: 299 DPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVS 340
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 32.7 bits (71), Expect = 0.063
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
+ D ++ +S+G+ FV+F + AI+ MNG+ L R I N
Sbjct: 38 INDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 32.7 bits (71), Expect = 0.063
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
+ D ++ +S+G+ FV+F + AI+ MNG+ L R I N
Sbjct: 38 INDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 32.7 bits (71), Expect = 0.063
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
+ D ++ +S+G+ FV+F + AI+ MNG+ L R I N
Sbjct: 38 INDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 32.7 bits (71), Expect = 0.063
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG--APSSKRAK 195
+S GY FVSF K AEAA+ G+ R IR S + + EG P + +
Sbjct: 229 RSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQ-AKEGLQPPEEEAEE 287
Query: 196 QPTFDEVYNQSSPT 237
+P+ E Q T
Sbjct: 288 EPSQSETMTQEHET 301
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 32.7 bits (71), Expect = 0.063
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
V D + +S+G+ F++F +K + AI AMNG L R+I
Sbjct: 39 VLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTI 78
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 32.7 bits (71), Expect = 0.063
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTF 207
+GYAFV+F DA A + +NG GS+ + + +K + + K +Q
Sbjct: 241 RGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMI 300
Query: 208 DEVYN 222
+V N
Sbjct: 301 AKVSN 305
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
KS+GY FV F ++ A AAIQ +N + + I
Sbjct: 150 KSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 156
KSKG+ FV F +A A++ +GQ + + + +K K
Sbjct: 342 KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRK 386
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 32.7 bits (71), Expect = 0.063
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 201
KSKG+ FV+F DA A+ A+NG+ + W K K +E K+ +
Sbjct: 262 KSKGFGFVNFENSDDAARAVDALNGKTFDDK----EWFVGKAQKK--SERETELKQKFEQ 315
Query: 202 TFDEVYNQSSPTNTTV 249
+ E ++S +N V
Sbjct: 316 SLKEAADKSQGSNLYV 331
Score = 30.3 bits (65), Expect = 0.33
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 156
+RDP + S+G FV+F +A AI MNG+ + ++ + + RK K
Sbjct: 359 MRDPSGV-SRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRK 409
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
+SKGY FV + A+ AI +NG L + +
Sbjct: 171 QSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.3 bits (70), Expect = 0.083
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 16 TLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKR 189
T +S+G+ F++F + + +I+ M+G+ G R I N R P G ++G R
Sbjct: 44 TGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVN---RAEPKLGRDDGESHGSR 98
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.083
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
++D T +S+G AFV +V + DA A ++M+ + L R +
Sbjct: 89 LKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKL 128
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 32.3 bits (70), Expect = 0.083
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR---KPPAKGVNEG 171
V DP T +S+G+ F+S DA I++++ L R I + R + P G G
Sbjct: 107 VLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARRRRGRTPTPGKYLG 166
Query: 172 APSSK-RAKQPTF 207
+++ R K P++
Sbjct: 167 LRTARGRHKSPSY 179
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
+RD T KSKG+AF+++ + A+ +NG + R+I+ +
Sbjct: 68 IRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVD 110
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKP 147
+ D + +SKGYAF+ + + A A++ MNG+ + I + + KP
Sbjct: 314 IMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTKP 362
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 201
+ +AF+ + + DA A+ A N L + I ++ + A+G N +P +R + P
Sbjct: 90 RNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARG-NGHSPERRRDRSP 146
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 201
+ +AF+ + + DA A+ A N L + I ++ + A+G N +P +R + P
Sbjct: 131 RNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARG-NGHSPERRRDRSP 187
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLG--SRSIRTNWS-TRKPPAKGVNEGAPSSKRAKQP 201
G+AFV + DAE AI+A++ G R +R W+ + + K G+ S + +P
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRP 95
Query: 202 T 204
+
Sbjct: 96 S 96
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
V D + KG+AF+ + + +A AIQ M+G++L R I
Sbjct: 109 VMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVI 148
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.1 bits (67), Expect = 0.19
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNG 96
KSKG+ FV+F DA A++++NG
Sbjct: 67 KSKGFGFVNFENADDAARAVESLNG 91
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
V+D +T SKGYAF + + + A A+NG +G +++
Sbjct: 407 VKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTL 446
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSR 114
V +P+T S+G+AFV+ DAE I+ +N L R
Sbjct: 104 VMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSR 114
V +P+T S+G+AFV+ DAE I+ +N L R
Sbjct: 103 VMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93
VRD T S+G+AFV F DA A++A N
Sbjct: 490 VRDKFTHVSRGFAFVHFYSVEDATKALEATN 520
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 30.7 bits (66), Expect = 0.25
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK---GVNEGAPSSKRAK 195
SKG FV F +A A+ MNG+ +G++ I + + K K P +
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNPPPSPHQ 321
Query: 196 QPTFDEV 216
QP F +V
Sbjct: 322 QPIFSQV 328
>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to rho-GTPase activating protein [Homo
sapiens] GI:14245732; contains Pfam profiles PF00169: PH
domain, PF00620: RhoGAP domain
Length = 870
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 145 PPAKGVNEGAPSSKRAKQPTF 207
P AK VN+G PSS AK+ TF
Sbjct: 530 PSAKSVNKGTPSSVHAKRATF 550
>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to rho-GTPase activating protein [Homo
sapiens] GI:14245732; contains Pfam profiles PF00169: PH
domain, PF00620: RhoGAP domain
Length = 822
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 145 PPAKGVNEGAPSSKRAKQPTF 207
P AK VN+G PSS AK+ TF
Sbjct: 530 PSAKSVNKGTPSSVHAKRATF 550
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 30.3 bits (65), Expect = 0.33
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAP 177
V DP T KG AFV+F K A+ A++G SR I+ A GV AP
Sbjct: 477 VTDPVTRHPKGTAFVTFATKESVGKAV-ALSGTMFYSRPIKVRMHV---IASGVVSAAP 531
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.9 bits (64), Expect = 0.44
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
+S+G+ FV+F +A+ A++++ G LGS+ + + +K
Sbjct: 240 RSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKK 280
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 141
R+ T KS YA+++F A A+ +N L +++R WS R
Sbjct: 54 RNSVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQR 99
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 29.9 bits (64), Expect = 0.44
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSR 114
+++PQT KSKG AF+ F A+ A++ + + +
Sbjct: 246 LKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGK 283
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 29.9 bits (64), Expect = 0.44
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSR---SIRTNWSTRKPPAKGVNE- 168
+ D T KSKGY FV+F + A A+ N G + +I + R P +G +
Sbjct: 49 ITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQT 108
Query: 169 GAPSSKRAKQPT 204
G+PS ++ P+
Sbjct: 109 GSPSQYQSGGPS 120
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 29.9 bits (64), Expect = 0.44
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSR---SIRTNWSTRKPPAKGVNE- 168
+ D T KSKGY FV+F + A A+ N G + +I + R P +G +
Sbjct: 49 ITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQT 108
Query: 169 GAPSSKRAKQPT 204
G+PS ++ P+
Sbjct: 109 GSPSQYQSGGPS 120
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 29.5 bits (63), Expect = 0.59
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLG--SRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPT 204
G+AFV + DAE AI+A++ G R +R W+ G + G+ S +P+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPS 95
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 29.5 bits (63), Expect = 0.59
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLG--SRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPT 204
G+AFV + DAE AI+A++ G R +R W+ G + G+ S +P+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPS 95
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 29.5 bits (63), Expect = 0.59
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNG 96
+GYAFV F K A AAI+A+NG
Sbjct: 247 RGYAFVQFSCKEMALAAIKALNG 269
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 29.5 bits (63), Expect = 0.59
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
V DP T +S+G+ F+S DA I++++ L R I
Sbjct: 77 VLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVI 116
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 29.1 bits (62), Expect = 0.77
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93
+ D T +SKGY FV+F + A A Q MN
Sbjct: 54 ITDKNTGRSKGYGFVTFKEAEAAMRACQNMN 84
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWL 105
+ D + +SKG+ FV++ DAE A MN ++L
Sbjct: 66 ITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFL 100
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.1 bits (62), Expect = 0.77
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRS--IRTNWSTRKPPAKGVNEGAPS 180
DP T K KG+ F F AI+ + + + + + N +T++ K V + +
Sbjct: 237 DPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNVNQATKEYLLKYVEKKIET 296
Query: 181 SKRAKQ 198
+K+AK+
Sbjct: 297 AKKAKE 302
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 29.1 bits (62), Expect = 0.77
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW---STRKPPAKGVNEGA 174
RD T +G+ FV F+ ADA A M+G L R + + + +KP E
Sbjct: 69 RDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERG 128
Query: 175 PSSKRAKQPTFDEVYNQS 228
R ++ T Y++S
Sbjct: 129 GGRFRDRRRTPPRYYSRS 146
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 29.1 bits (62), Expect = 0.77
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 186
D T SK + F+S+ +A A+ AI MNG L + + K K N +
Sbjct: 373 DKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKL-------KVQLKRDNGQQQQQQ 425
Query: 187 RAKQPTFDEVYN 222
++K P F+ + N
Sbjct: 426 QSKNPLFNGLLN 437
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQ 99
SKG F+ + K A AA++A+NG+
Sbjct: 148 SKGCLFLKYESKEQAVAAMEALNGR 172
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 29.1 bits (62), Expect = 0.77
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 186
D T SK + F+S+ +A A+ AI MNG L + + K K N +
Sbjct: 364 DKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKL-------KVQLKRDNGQQQQQQ 416
Query: 187 RAKQPTFDEVYN 222
++K P F+ + N
Sbjct: 417 QSKNPLFNGLLN 428
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQ 99
SKG F+ + K A AA++A+NG+
Sbjct: 139 SKGCLFLKYESKEQAVAAMEALNGR 163
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVN 165
K GY FV F + + A++ NG++L I + + P G N
Sbjct: 282 KHVGYGFVEFASADETKKALENKNGEYLHDHKIFIDVAKTAPYPPGPN 329
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKG 159
+ YAFV+F DA AAI+++ G L +R ++ + + G
Sbjct: 58 RSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIEFAKAEKSSTG 101
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
RD + + +G+AFV FV DA A ++MN + R I
Sbjct: 80 RDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREI 118
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS--TRKPPAK 156
RD T +G+ F+ F+ ADA A M+G L R + ++ RK P +
Sbjct: 70 RDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKPTE 122
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW 132
D + + + FVSF+ +AD +AA M G + ++ W
Sbjct: 216 DEEKRRQRNCGFVSFMNRADGQAAKDEMQGIIVYEYELKIGW 257
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 7 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLG--SRSIRTNWSTRKPPAKGVNEGAPS 180
D +KS GYAFV F + DAE AI+ ++ G R + W+ + + APS
Sbjct: 29 DRVDMKS-GYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPS 87
Query: 181 SKRAKQPTF 207
+ + + F
Sbjct: 88 NLKPTKTLF 96
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
+RD +T S YAF+ F K E A M+ + R I ++S
Sbjct: 275 IRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRIHVDFS 319
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
K GY FV F A A++ NG++L + I
Sbjct: 196 KHVGYGFVEFASAYGANKALEEKNGEYLHNHKI 228
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 96
+ D ++ +S+G+ FV+F + AI+ MNG
Sbjct: 38 INDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 144
+R+ + KGYAFV+F K A AI +N + I+ + + K
Sbjct: 124 MREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAK 171
>At1g48360.1 68414.m05402 expressed protein ; expression supported
by MPSS
Length = 688
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 113 DPYVRTGQRVNHQRRV*MKARP 178
DP+VR G RV QRR+ A+P
Sbjct: 420 DPWVRAGSRVALQRRILRLAKP 441
>At3g52840.1 68416.m05823 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
GI:3869280 from [Carica papaya]
Length = 727
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -2
Query: 261 TATVNCGVCR*ALIINFVKCWLFCSLTTGRAFIHTLRWW 145
TA NCG C A I N KC C + R + H R W
Sbjct: 661 TARGNCGRCNYAGIYNEKKCLSHCGEPSQR-WYHVPRSW 698
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 120
K GY FV F A A++ NG++L I
Sbjct: 720 KHVGYGFVEFASPCLANMALEKKNGEYLHDHKI 752
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVN 165
+G+ +V F +ADAE A M+G + + ++ ++ PP + V+
Sbjct: 139 RGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTL--PPRQKVS 182
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 28 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVN 165
+G+ +V F +ADAE A M+G + + ++ ++ PP + V+
Sbjct: 139 RGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTL--PPRQKVS 182
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNG 96
KSKGY V F A A A + MNG
Sbjct: 241 KSKGYCQVEFYDSAAAAACKEGMNG 265
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 40 FVSFVKKADAEAAIQAMNGQWLGSRSIRTNW 132
FV+F+ +AD EAA + M G + ++ W
Sbjct: 235 FVAFMNRADGEAAKEKMQGIIVYEYELKIGW 265
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQA 87
+ D T +SKGY FV+F DA+AA +A
Sbjct: 49 ISDKLTRRSKGYGFVTF---KDAKAATRA 74
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWL--GSRSIRTNWS 135
GYAFV F + DAE AI+ + G R + W+
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWA 46
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWL--GSRSIRTNWS 135
GYAFV F + DAE AI+ + G R + W+
Sbjct: 36 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWA 72
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 43 VSFVKKADAEAAIQAMN--GQWLGSRSIRTNWSTRKPPAKGVNEGAPS 180
++FV+ A AE+A+ A+N G LGS+ IR S K P + +PS
Sbjct: 267 IAFVEFAMAESAVAALNCSGIVLGSQPIRV--SPSKTPVRSRITRSPS 312
>At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical to
dynamin-like protein 6 (ADL6) [Arabidopsis thaliana]
GI:6651399; contains Pfam profiles PF01031: Dynamin
central region, PF00350: Dynamin family, PF02212:
Dynamin GTPase effector domain, PF00169: PH domain
Length = 914
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 106 GSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQ 225
G S+ T W K + GAP SK + D + +Q
Sbjct: 254 GENSLETAWRAESESLKSILTGAPQSKLGRIALVDTLASQ 293
>At5g47580.1 68418.m05873 expressed protein strong similarity to
unknown protein (pir||E71441)
Length = 748
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 182 VREQNSQHLTKFIIKAHRQTPQFTVAVS 265
V ++ Q L+KF + AH +PQF +A S
Sbjct: 202 VAKKIQQDLSKFWMMAHTSSPQFVMARS 229
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
GYAFV FV K +A A +A+ R + W+
Sbjct: 710 GYAFVEFVTKQEALNAKKALASTHFYGRHLVLEWA 744
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 13 QTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
+T + + F+ + DAE A++A+N +G + I+ S
Sbjct: 301 ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELS 341
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 13 QTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 135
+T + + F+ + DAE A++A+N +G + I+ S
Sbjct: 314 ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELS 354
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 93
+ D T KSKGY FV+F A A+ N
Sbjct: 49 ITDKATGKSKGYGFVTFRDSDSATRAVADPN 79
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 4 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 129
R+ +T KSK + F+ F AE A AMN L ++ +
Sbjct: 93 RNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVH 134
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQW 102
+S+G FV + K A AAI +NG +
Sbjct: 249 QSRGCGFVKYSSKETAMAAIDGLNGTY 275
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQW 102
+S+G FV + K A AAI +NG +
Sbjct: 249 QSRGCGFVKYSSKETAMAAIDGLNGTY 275
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQW 102
+S+G FV + K A AAI +NG +
Sbjct: 7 QSRGCGFVKYSSKETAMAAIDGLNGTY 33
>At4g08690.1 68417.m01432 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650: CRAL/TRIO domain; similar to
polyphosphoinositide binding protein Ssh2p (GI:2739046)
[Glycine max]; similar to SEC14-like protein (GB:U82515)
[D. discoideum]
Length = 301
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 3 TRSSNAQIQGLCFCIICKESRCRSCHPGNEWPVAGIKIHTYELVN 137
++S QI+ L +C+ E+ ++ PG E V I H Y L N
Sbjct: 116 SKSVKGQIRYLVYCM---ENAVQNLPPGEEQMVWMIDFHGYSLAN 157
>At3g29270.2 68416.m03675 expressed protein
Length = 263
Score = 25.8 bits (54), Expect = 7.2
Identities = 7/36 (19%), Positives = 19/36 (52%)
Frame = +3
Query: 24 IQGLCFCIICKESRCRSCHPGNEWPVAGIKIHTYEL 131
++ + + + C + C++C G +W + + H +L
Sbjct: 64 VENVPYVLWCGHTMCKNCILGLQWAIVKLPTHPVQL 99
>At3g29270.1 68416.m03674 expressed protein
Length = 263
Score = 25.8 bits (54), Expect = 7.2
Identities = 7/36 (19%), Positives = 19/36 (52%)
Frame = +3
Query: 24 IQGLCFCIICKESRCRSCHPGNEWPVAGIKIHTYEL 131
++ + + + C + C++C G +W + + H +L
Sbjct: 64 VENVPYVLWCGHTMCKNCILGLQWAIVKLPTHPVQL 99
>At3g10650.1 68416.m01281 expressed protein
Length = 1309
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +1
Query: 97 QWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTNTTVYCGG 261
Q + S ++ ST P G + AP+S P F + SS T TT GG
Sbjct: 1070 QLSSTNSSASSSSTMSSPLFGTSWQAPNSSPNSGPVFSSSFTTSS-TPTTFSFGG 1123
>At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1)
identical to sterol-C5-desaturase GB:AAD12944 GI:4234768
from [Arabidopsis thaliana]
Length = 281
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3
Query: 30 GLCFCIICKESRCRSCHPGNEWPVAGIKIHT 122
GL F + C GN WPV G HT
Sbjct: 209 GLLFMEAIWTANIHDCIHGNIWPVMGAGYHT 239
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNG 96
GYAFV F DAE AI +G
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDG 67
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNG 96
GYAFV F DAE AI +G
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDG 67
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 31 GYAFVSFVKKADAEAAIQAMNG 96
GYAFV F DAE AI +G
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDG 67
>At5g37620.1 68418.m04531 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 21 QIQGLCFCIICKESRCRSC 77
Q QGL C +C S CR+C
Sbjct: 215 QDQGLHHCDVCNFSICRAC 233
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSR 114
+S+G+AF+ F A A+ M+G+ +G +
Sbjct: 55 ESRGFAFIEFESADSAGRAMLHMDGRLIGQK 85
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 25 SKGYAFVSFVKKADAEAAIQAMNGQ 99
SKG AF+ + K A +A++++NG+
Sbjct: 145 SKGCAFLKYETKEQAVSAMESINGK 169
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKP-----PAKGVNEGAPSSK 186
KSKGY F+ + ++ A A++ + +GSR +++ P P AP+
Sbjct: 179 KSKGYGFILYKSRSGARNALKQPQKK-IGSRMTACQLASKGPVFGGAPIAAAAVSAPAQH 237
Query: 187 RAKQPTFDEVY 219
+ T ++Y
Sbjct: 238 SNSEHTQKKIY 248
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKP-----PAKGVNEGAPSSK 186
KSKGY F+ + ++ A A++ + +GSR +++ P P AP+
Sbjct: 179 KSKGYGFILYKSRSGARNALKQPQKK-IGSRMTACQLASKGPVFGGAPIAAAAVSAPAQH 237
Query: 187 RAKQPTFDEVY 219
+ T ++Y
Sbjct: 238 SNSEHTQKKIY 248
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 22 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKP-----PAKGVNEGAPSSK 186
KSKGY F+ + ++ A A++ + +GSR +++ P P AP+
Sbjct: 179 KSKGYGFILYKSRSGARNALKQPQKK-IGSRMTACQLASKGPVFGGAPIAAAAVSAPAQH 237
Query: 187 RAKQPTFDEVY 219
+ T ++Y
Sbjct: 238 SNSEHTQKKIY 248
>At3g23310.1 68416.m02940 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 568
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 157 GVNEGAPSSKRAKQPTFDEVYNQSSPTNTTVYCGGFL 267
G+ E S + K+P+ ++ S ++TT + G F+
Sbjct: 497 GIAELKKKSTKPKRPSIKSLFEDESASSTTSHQGSFM 533
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQA 87
+ D T +SKGY FV+F D EAA +A
Sbjct: 56 IADKNTGRSKGYGFVTF---RDPEAARRA 81
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 1 VRDPQTLKSKGYAFVSFVKKADAEAAIQA 87
+ D T +SKGY FV+F D EAA +A
Sbjct: 56 ITDKNTGRSKGYGFVTF---RDPEAARRA 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.130 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,529,137
Number of Sequences: 28952
Number of extensions: 125306
Number of successful extensions: 640
Number of sequences better than 10.0: 150
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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