Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0295
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   5.0  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    26   5.0  

>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +3

Query: 357 SQAGTNFSNEIRTQPMFINTGYRNKLSVFFFSFMTHVKIR-----LKTIPKDISYILMYF 521
           +Q  +   N +   P  ++    N++++ F+   T          L TIP+  S+++ Y+
Sbjct: 439 TQVSSRVDNFLLKLPSMVSLELTNEMALEFYDLNTKASRNRLIKALCTIPRTSSFLVPYY 498

Query: 522 IKLMSSLS 545
           ++L   LS
Sbjct: 499 VRLARILS 506


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 379 EKLVPAWDSNTGASQHECAGRLIL*ATFGW 290
           +K V  WD +TGA Q++ +G      T  W
Sbjct: 145 DKTVKVWDLSTGAVQYDLSGHEDYVRTASW 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,266
Number of Sequences: 5004
Number of extensions: 61814
Number of successful extensions: 144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)