Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0295
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z79759-5|CAB02140.2|  409|Caenorhabditis elegans Hypothetical pr...    30   1.5  

>AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical
           protein T11F8.1 protein.
          Length = 261

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 396 QPMFINTGYRNKLSVFFFSFMTHVKIRL-KTIPKDISYILMYF 521
           +PM  NT   N  SV+F+ F+ H+KI++ KT  K I +   +F
Sbjct: 214 KPMESNTKSTNTTSVYFWQFL-HLKIKISKTFYKFIQFFKCFF 255


>Z79759-5|CAB02140.2|  409|Caenorhabditis elegans Hypothetical
           protein ZK858.5 protein.
          Length = 409

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 150 NTW*DKHFLSHKNLFTSLYCLLVLSVTSKIIE*NIQLKETFKANFNET 7
           +TW  KHFL   +LF  L C+++L  + K+ +   Q+  T    F ET
Sbjct: 205 HTW--KHFLFWSSLFLMLVCVILLGCSRKVAD--KQVTATRPGTFRET 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,240,446
Number of Sequences: 27780
Number of extensions: 336445
Number of successful extensions: 639
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)