Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0295
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger) fa...    32   0.47 
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa...    32   0.47 
At5g42490.1 68418.m05172 kinesin motor family protein contains P...    31   0.82 
At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identi...    30   1.4  
At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identi...    30   1.9  
At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger) fa...    30   1.9  
At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase fa...    30   1.9  
At1g32660.1 68414.m04028 F-box family protein contains Pfam prof...    30   1.9  
At3g07160.1 68416.m00853 glycosyl transferase family 48 protein ...    28   5.8  

>At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 341

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = -2

Query: 350 HRCIATRMRRTSYPLGHIWVVLARYFKQYITVTEIN*NRDKKRSSVEQCVESDIHGEFLI 171
           H      M R  Y  GH+      Y +    VT  N + + K+ S+    + D  G FL+
Sbjct: 100 HSWAPVAMARYPYA-GHMMAQPTPYVEHQKAVTIRN-DVNLKKESLRLEPDPDNPGRFLV 157

Query: 170 SFTFNYSIPGKIN 132
           SFTF+ ++ G+I+
Sbjct: 158 SFTFDATVSGRIS 170


>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 388

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = -2

Query: 350 HRCIATRMRRTSYPLGHIWVVLARYFKQYITVTEIN*NRDKKRSSVEQCVESDIHGEFLI 171
           H      M R  Y  GH+      Y +    VT  N + + K+ S+    + D  G FL+
Sbjct: 100 HSWAPVAMARYPYA-GHMMAQPTPYVEHQKAVTIRN-DVNLKKESLRLEPDPDNPGRFLV 157

Query: 170 SFTFNYSIPGKIN 132
           SFTF+ ++ G+I+
Sbjct: 158 SFTFDATVSGRIS 170


>At5g42490.1 68418.m05172 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1087

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 519 FIKLMSSLSFSPDLLSGSRF*SGGRFCEALLLLGSVLATFRFEPREL 659
           FI L  S   S  L +G+R   G     +LL LG+V+   RF+P ++
Sbjct: 233 FIDLAGSERASQTLSAGTRLKEGCHINRSLLTLGTVIRKLRFDPCDI 279


>At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identical
           to CLC-b chloride channel protein GB:CAA96058 from
           [Arabidopsis thaliana] (J. Biol. Chem. 271 (52),
           33632-33638 (1996))
          Length = 780

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 168 TN*ELSMYIRLHTLLYTTPFFISVSIYLCYCYVLF-EISRQH 290
           T+ E+ MY+ LH L  TTP+ +  ++ +    VLF ++  +H
Sbjct: 694 TSAEMEMYVDLHPLTNTTPYTVMENMSVAKALVLFRQVGLRH 735


>At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identical
           to GI:1742952 (gb|AAC05742.1)
          Length = 775

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 168 TN*ELSMYIRLHTLLYTTPFFISVSIYLCYCYVLFEISRQHHPNVA*RIR 317
           T+ E+ +Y+ LH L  TTP+ +  S+ +    VLF      H  V  +I+
Sbjct: 689 TSSEMQLYVDLHPLTNTTPYTVVQSMSVAKALVLFRSVGLRHLLVVPKIQ 738


>At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 299

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = -2

Query: 314 YPLGHIWVVLARYFKQYITVTEIN*NRDKKRSSVEQCVESDIHGEFLISFTFNYSIPGKI 135
           YP G +     +Y +    VT  N + + K+ ++    +    G+FL+SFTF+ S+PG I
Sbjct: 43  YPYGEM-ASPVQYVEHQEAVTIRN-DINLKKETLRLEPDEQNPGKFLLSFTFDASVPGSI 100


>At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
           musculus [SP|P70704], {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1213

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 420 YRNKLSVFFFSFMTHVKIRLKTIPKDISYILMYFIKLMSSLSF 548
           YRN L + FF+F T V +    IP  + Y+ +  IK + S  F
Sbjct: 336 YRNGLMIGFFTFFTLVTLFSSIIPISL-YVSIEMIKFIQSTQF 377


>At1g32660.1 68414.m04028 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 446

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 366 GTNFSNEIRTQPMFINTGYRNKLSVFFFSFMTHV--KIRLKTIPKDISYILMY 518
           GTN + EI   PMF++   R+   +F+++  T    ++RL+ I  DI +   Y
Sbjct: 363 GTNKAGEIIIAPMFLSRDVRS-FYIFYYNVETKTMRRVRLRGIGSDIEFRRSY 414


>At3g07160.1 68416.m00853 glycosyl transferase family 48 protein
           similar to glucan synthase GB:AAD11794 [Filobasidiella
           neoformans var. neoformans]
          Length = 1931

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 252 CYCYVLFEISRQHHPNVA*RIRRPAHSCCDAPVFESQAGTNFSNEI 389
           C CY+   + R+    +  ++ RPA SC       S  G +F + +
Sbjct: 357 CLCYIFHHMVREMDEILRQQVARPAESCMPVDSRGSDDGVSFLDHV 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,030,449
Number of Sequences: 28952
Number of extensions: 301000
Number of successful extensions: 585
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)